name: gatk4_createsequencedictionary
description: Creates a sequence dictionary for a reference sequence
keywords:
  - createsequencedictionary
  - dictionary
  - fasta
  - gatk4
tools:
  - gatk:
      description: |
        Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools
        with a primary focus on variant discovery and genotyping. Its powerful processing engine
        and high-performance computing features make it capable of taking on projects of any size.
      homepage: https://gatk.broadinstitute.org/hc/en-us
      documentation: https://gatk.broadinstitute.org/hc/en-us/categories/360002369672s
      doi: 10.1158/1538-7445.AM2017-3590
      licence: ["Apache-2.0"]

input:
  - meta:
      type: map
      description: |
        Groovy Map containing reference information
        e.g. [ id:'genome' ]
  - fasta:
      type: file
      description: Input fasta file
      pattern: "*.{fasta,fa}"
output:
  - dict:
      type: file
      description: gatk dictionary file
      pattern: "*.{dict}"
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
authors:
  - "@maxulysse"
  - "@ramprasadn"
