name: gatk4_mergemutectstats
description: Merges mutect2 stats generated on different intervals/regions
keywords:
  - gatk4
  - merge
  - mutect2
  - mutectstats
tools:
  - gatk4:
      description: Genome Analysis Toolkit (GATK4)
      homepage: https://gatk.broadinstitute.org/hc/en-us
      documentation: https://gatk.broadinstitute.org/hc/en-us/categories/360002369672s
      tool_dev_url: https://github.com/broadinstitute/gatk
      doi: "10.1158/1538-7445.AM2017-3590"
      licence: ["BSD-3-clause"]
input:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - stats:
      type: file
      description: Stats file
      pattern: "*.{stats}"
output:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
  - stats:
      type: file
      description: Stats file
      pattern: "*.vcf.gz.stats"
authors:
  - "@FriederikeHanssen"
maintainers:
  - "@FriederikeHanssen"
