name: "spring_decompress"
description: Fast, efficient, lossless decompression of FASTQ files.
keywords:
  - FASTQ
  - decompression
  - lossless
tools:
  - "spring":
      description: "SPRING is a compression tool for Fastq files (containing up to 4.29 Billion reads)"
      homepage: "https://github.com/shubhamchandak94/Spring"
      documentation: "https://github.com/shubhamchandak94/Spring/blob/master/README.md"
      tool_dev_url: "https://github.com/shubhamchandak94/Spring"
      doi: "10.1093/bioinformatics/bty1015"
      licence: ["Free for non-commercial use"]
input:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - spring:
      type: file
      description: Spring file to decompress.
      pattern: "*.{spring}"
  - write_one_fastq_gz:
      type: boolean
      description: |
        Controls whether spring should write one fastq.gz file with reads from both directions or two fastq.gz files with reads from distinct directions
      pattern: "true or false"
output:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
  - fastq:
      type: file
      description: Decompressed FASTQ file(s).
      pattern: "*.{fastq.gz}"
authors:
  - "@xec-cm"
maintainers:
  - "@xec-cm"
