.DS_Store
annotation/**/*.vcf.{gz,gz.tbi}
csv/*.csv
multiqc/multiqc_data/gatk-base-recalibrator-reported-empirical-plot.txt
multiqc/multiqc_data/gatk_base_recalibrator.txt
multiqc/multiqc_data/multiqc.log
multiqc/multiqc_data/multiqc_data.json
multiqc/multiqc_data/multiqc_general_stats.txt
multiqc/multiqc_data/multiqc_picard_dups.txt
multiqc/multiqc_data/multiqc_software_versions.txt
multiqc/multiqc_data/multiqc_sources.txt
multiqc/multiqc_data/picard_deduplication.txt
multiqc/multiqc_data/vcftools_tstv_by_qual.txt
multiqc/multiqc_plots/{svg,pdf,png}/*.{svg,pdf,png}
multiqc/multiqc_report.html
no_intervals.{bed,bed.gz,bed.gz.tbi}
pipeline_info/*.{html,json,txt,yml}
preprocessing/**/*.{md,recal,sorted}.{bam,bam.bai,cram,cram.crai,table}
reference/dragmap/hash_table.{cfg,cfg.bin}
reference/dragmap/hash_table_stats.txt
reports/EnsemblVEP/*/*.ann.summary.html
reports/fastqc/**/*_fastqc.{html,zip}
reports/markduplicates/**/*.md.cram.metrics
reports/snpeff/*/*_snpEff.csv
reports/snpeff/*/snpEff_summary.html
reports/vcftools/**/*.TsTv.qual
variant_calling/**/*.vcf.{gz,gz.tbi}
variant_calling/controlfreec/*/config.txt
