<div id="LAI" class="tabcontent" style="display: none">
    <div class="section-para-wrapper">
        <p class="section-para">
            LTR Assembly Index (LAI) is a reference-free genome metric that evaluates assembly continuity using LTR-RTs.
            LTR retrotransposons (LTR-RTs) are the predominant interspersed repeat that is poorly assembled in draft
            genomes. Correcting for LTR-RT amplification dynamics, LAI is independent of genome size, genomic LTR-RT
            content, and gene space evaluation metrics such as BUSCO. LAI = Raw LAI + 2.8138 × (94 – whole genome LTR
            identity). The LAI is set to 0 when raw LAI = 0 or the adjustment produces a negative value. Raw LAI =
            (Intact LTR element length / Total LTR sequence length) * 100
        </p>
        <p class="section-para"><b>Reference:</b></p>
        <p class="section-para">
            Shujun Ou, Jinfeng Chen, Ning Jiang, Assessing genome assembly quality using the LTR Assembly Index (LAI),
            Nucleic Acids Research, Volume 46, Issue 21, 30 November 2018, Page e126,
            <a href="https://doi.org/10.1093/nar/gky730" target="_blank">10.1093/nar/gky730</a>
        </p>
        <p class="section-para"><b>Version: {{ all_stats_dicts['VERSIONS']['LTRRETRIEVER_LAI']['lai'] }}</b></p>
    </div>
    {% include 'lai/dropdown.html' %} {% include 'lai/summary_contents.html' %}
</div>
