# plant-food-research-open/assemblyqc: Documentation

The plant-food-research-open/assemblyqc documentation is split into the following pages:

- [Usage](usage.md)
  - An overview of how the pipeline works, how to run it.
- [Parameters](parameters.md)
  - A description of all of the different command-line flags.
- [Output](output.md)
  - An overview of the different results produced by the pipeline and how to interpret them.
