<div id="SYNTENY_DOTPLOT" class="tabcontent" style="display: none">
  <div class="section-para-wrapper">
    <p class="section-para">The genome-wide alignments are performed with MUMMER.</p>
    <p class="section-para"><b>References:</b></p>
    <p class="section-para">
      Krzywinski, M., Schein, J., Birol, I., Connors, J., Gascoyne, R., Horsman, D., ... & Marra, M. A. (2009).
      Circos: an information aesthetic for comparative genomics. Genome research, 19(9), 1639-1645.
      <a href="https://doi.org/10.1101/gr.092759.109" target="_blank">https://doi.org/10.1101/gr.092759.109</a>
    </p>
    <p class="section-para">
      <b>Version: {{ all_stats_dicts['VERSIONS']['MUMMER']['nucmer'] }} (MUMMER)</b>
    </p>
    <p class="section-para"><b>Notes:</b></p>
    <ul>
      <li>
        Alignments within a distance of {{ all_stats_dicts['PARAMS_DICT']['synteny_mummer_max_gap'] }}bp have been
        bundled together.
      </li>
      <li>
        After bundling, any bundle smaller than {{ all_stats_dicts['PARAMS_DICT']['synteny_mummer_min_bundle_size'] }}bp has
        been filtered out.
      </li>
      <li>
        The sequence labels shown on the plot are based on the labelling file provided to the pipeline. These labels may
        or may not be same as the sequence IDs in the corresponding FASTA files.
      </li>
    </ul>
  </div>
  {% include 'synteny_dotplot/dropdown.html' %} {% include 'synteny_dotplot/report_contents.html' %}
</div>
