<div id="SYNTENY_CIRCOS" class="tabcontent" style="display: none">
    <div class="section-para-wrapper">
        <p class="section-para">
            Circos facilitates the identification and analysis of similarities and differences arising from comparisons
            of genomes. The genome-wide alignments are performed with MUMMER.
        </p>
        <p class="section-para"><b>References:</b></p>
        <p class="section-para">
            Krzywinski, M., Schein, J., Birol, I., Connors, J., Gascoyne, R., Horsman, D., ... & Marra, M. A. (2009).
            Circos: an information aesthetic for comparative genomics. Genome research, 19(9), 1639-1645.
            <a href="https://doi.org/10.1101/gr.092759.109" target="_blank">10.1101/gr.092759.109</a>
        </p>
        <p class="section-para">
            Marçais G, Delcher AL, Phillippy AM, Coston R, Salzberg SL, Zimin A. MUMmer4: A fast and versatile genome
            alignment system. PLoS Comput Biol. 2018 Jan 26;14(1):e1005944.
            <a href="https://doi.org/10.1371/journal.pcbi.1005944" target="_blank">10.1371/journal.pcbi.1005944</a>
        </p>
        <p class="section-para">
            <b
                >Versions: {{ all_stats_dicts['VERSIONS']['CIRCOS']['circos'] }} (CIRCOS), {{
                all_stats_dicts['VERSIONS']['MUMMER']['nucmer'] }} (MUMMER)</b
            >
        </p>
        <p class="section-para"><b>Notes:</b></p>
        <ul>
          <li>
            Alignments within a distance of {{ all_stats_dicts['PARAMS_DICT']['synteny_mummer_max_gap'] }}bp have been
            bundled together.
          </li>
          <li>
            After bundling, any bundle smaller than {{ all_stats_dicts['PARAMS_DICT']['synteny_mummer_min_bundle_size'] }}bp has been filtered out.
          </li>
          <li>
            The sequence labels shown on the plot are based on the labelling file provided to the pipeline. These labels may or may not be same as the sequence IDs in the corresponding FASTA files.
          </li>
        </ul>
    </div>
    {% include 'synteny_circos/dropdown.html' %} {% include 'synteny_circos/report_contents.html' %}
</div>
