<div id="SYNTENY_PLOTSR" class="tabcontent" style="display: none">
  <div class="section-para-wrapper">
    <p class="section-para">
      Plotsr generates high-quality visualisation of synteny and structural rearrangements between multiple genomes. For
      this, it uses the genomic structural annotations between multiple chromosome-level assemblies. The genome-wide
      alignments are performed with Minimap2.
    </p>
    <p class="section-para"><b>References:</b></p>
    <p class="section-para">
      Goel M, Schneeberger K. 2022. plotsr: visualizing structural similarities and rearrangements between multiple
      genomes. Bioinformatics. 2022 May 13;38(10):2922-2926. doi: <a
        href="https://doi.org/10.1093/bioinformatics/btac196" target="_blank">10.1093/bioinformatics/btac196</a>.
      PMID: 35561173; PMCID: PMC9113368.
    </p>
    <p class="section-para">
      Goel M, Sun H, Jiao WB, Schneeberger K. 2019. SyRI: finding genomic rearrangements and local sequence differences
      from whole-genome assemblies. Genome Biol. 2019 Dec 16;20(1):277. doi: <a
        href="https://doi.org/10.1186/s13059-019-1911-0" target="_blank">10.1186/s13059-019-1911-0</a>. PMID: 31842948;
      PMCID: PMC6913012.
    </p>

    <p class="section-para">
      Li H. 2021. New strategies to improve minimap2 alignment accuracy, Bioinformatics, Volume 37, Issue 23, December
      2021, Pages 4572–4574, doi: <a href="https://doi.org/10.1093/bioinformatics/btab705"
        target="_blank">10.1093/bioinformatics/btab705</a>
    </p>

    <p class="section-para">
      <b>Versions: {% if 'PLOTSR' in all_stats_dicts['VERSIONS'] %}{{ all_stats_dicts['VERSIONS']['PLOTSR']['plotsr'] }}
        (PLOTSR), {% endif %}{{
        all_stats_dicts['VERSIONS']['SYRI']['syri'] }} (SYRI), {{
        all_stats_dicts['VERSIONS']['MINIMAP2_ALIGN']['minimap2'] }} (MINIMAP2)</b>
    </p>
  </div>
  {% include 'synteny_plotsr/report_contents.html' %}
</div>
