Research Object Crate for Nanopore Assembly Workflow - Deprecated -

#### - Deprecated - #### See our updated hybrid assembly workflow: https://workflowhub.eu/workflows/367 #### And other workflows: https://workflowhub.eu/projects/16#workflows # **Workflow for sequencing with ONT Nanopore data, from basecalled reads to (meta)assembly and binning** - Workflow Nanopore Quality - Kraken2 taxonomic classification of FASTQ reads - Flye (de-novo assembly) - Medaka (assembly polishing) - metaQUAST (assembly quality reports) **When Illumina reads are provided:** - Workflow Illumina Quality: https://workflowhub.eu/workflows/336?version=1 - Assembly polishing with Pilon
- Workflow binnning https://workflowhub.eu/workflows/64?version=11 - Metabat2 - CheckM - BUSCO - GTDB-Tk **All tool CWL files and other workflows can be found here:**
Tools: https://git.wur.nl/unlock/cwl/-/tree/master/cwl
Workflows: https://git.wur.nl/unlock/cwl/-/tree/master/cwl/workflows

Author

Bart Nijsse, Jasper Koehorst, Germán Royval

License

Apache-2.0

Contents