FastQCFastQC Report
Wed 8 Jan 2020
SRR1039512_reverse.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1039512_reverse.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49712
Sequences flagged as poor quality0
Sequence length63
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTATTGATAGGACATAGTGGAAGTGGGCTACAACGTAGTACGTGTCGTGTAGTACGATGTC1660.33392339877695526No Hit
ACGTGTCGTGTAGTACGATGTCTAGTGATGAGTTTGCTAATACAATGCCAGTCAGGCCACCTA1610.3238654650788542No Hit
GCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATGTGCTTTCTCGTGTTACATCGCGCCA1530.3077727711618925No Hit
TCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCACGCCCTCATAATCATTTTCCTTATC1430.28765690376569036No Hit
GTACTACTCGATTGTCAACGTCAAGGAGTCGCAGGTCGCCTGGTTCTAGGAATAATGGGGGAA1400.28162214354682974No Hit
GTGTAGCCTGAGAATAGGGGAAATCAGTGAATGAAGCCTCCTATGATGGCAAATACAGCTCCT1390.27961055680720953No Hit
AATAATGGGGGAAGTATGTAGGAGTTGAAGATTAGTCCGCCGTAGTCGGTGTACTCGTAGGTT1210.2434019954940457No Hit
GTTACAATATGGGAGATTATTCCGAAGCCTGGTAGGATAAGAATATAAACTTCAGGGTGACCG1190.2393788220148053No Hit
AAATTATTAATATTACTGCTGTTAGAGAAATGAATGAGCCTACAGATGATAGGATGTTTCATG1180.23736723527518505No Hit
GCCCCTCTTCGTCTGATCCGTCCTAATCACAGCAGTCCTACTTCTCCTATCTCTCCCAGTCCT1140.22932088831670422No Hit
CCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAATGACCTCCGGCCTAGCCATGTGATTT1120.22529771483746378No Hit
TAGCAAACTCATCACTAGACATCGTACTACACGACACGTACTACGTTGTAGCCCACTTCCACT1110.2232861280978436No Hit
CGACAGCGATTTCTAGGATAGTCAGTAGAATTAGAATTGTGAAGATGATAAGTGTAGAGGGAA1100.22127454135822336No Hit
TCACTATCATATTCATCGGCGTAAATCTAACTTTCTTCCCACAACACTTTCTCGGCCTATCCG1070.2152397811393627No Hit
CCTTTTTTGTCTAGATTTTATGTATACGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCC1050.21121660766012232No Hit
AATGCCAGTCAGGCCACCTACGGTGAAAAGAAAGATGAATCCTAGGGCTCAGAGCACTGCAGC1050.21121660766012232No Hit
ATCATAGGAGGCTTCATTCACTGATTTCCCCTATTCTCAGGCTACACCCTAGACCAAACCTAC970.1951239137431606No Hit
TGGTTTAGACGTCCGGGAATTGCATCTGTTTTTAAGCCTAATGTGGGGACAGCTCATGAGTGC960.1931123270035404No Hit
GTAGTACGTGTCGTGTAGTACGATGTCTAGTGATGAGTTTGCTAATACAATGCCAGTCAGGCC910.18305439330543932No Hit
GATGTCTAGTGATGAGTTTGCTAATACAATGCCAGTCAGGCCACCTACGGTGAAAAGAAAGAT870.17500804634695846No Hit
ATATTGTAACTTACTACTCCGGAAAAAAAGAACCATTTGGATACATAGGTATGGTCTGAGCTA860.17299645960733828No Hit
CTGAGAATAGGGGAAATCAGTGAATGAAGCCTCCTATGATGGCAAATACAGCTCCTATTGATA850.17098487286771805No Hit
TATCTCATCAACAACCGACTAATCACCACCCAACAATGACTAATCAAACTAACCTCAAAACAA850.17098487286771805No Hit
TTACAATATGGGAGATTATTCCGAAGCCTGGTAGGATAAGAATATAAACTTCAGGGTGACCGA850.17098487286771805No Hit
GTATGGTTATCATTTGTTTTGAGGTTAGTTTGATTAGTCATTGTTGGGTGGTGATTAGTCGGT790.1589153524299968No Hit
CTACAGATGATAGGATGTTTCATGTGGTGTATGCATCGGGGTAGTCCGAGTAACGTCGGGGCA780.15690376569037656No Hit
TAGGGTGTAGCCTGAGAATAGGGGAAATCAGTGAATGAAGCCTCCTATGATGGCAAATACAGC770.15489217895075635No Hit
AAGACATTGGAACACTATACCTATTATTCGGCGCATGAGCTGGAGTCCTAGGCACAGCTCTAA760.15288059221113615No Hit
TAGTCCGAGTAACGTCGGGGCATTCCGGATAGGCCGAGAAAGTGTTGTGGGAAGAAAGTTAGA760.15288059221113615No Hit
TAGCGGAGGTGAAATATGCTCGTGTGTCTACGTCTATTCCTACTGTAAATATATGGTGTGCTC740.1488574187318957No Hit
AAATGAATGAGCCTACAGATGATAGGATGTTTCATGTGGTGTATGCATCGGGGTAGTCCGAGT740.1488574187318957No Hit
AAAATCCATTTCACTATCATATTCATCGGCGTAAATCTAACTTTCTTCCCACAACACTTTCTC730.14684583199227552No Hit
TTTACGCCGATGAATATGATAGTGAAATGGATTTTGGCGTAGGTTTGGTCTAGGGTGTAGCCT730.14684583199227552No Hit
TGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCTGTGACGATAACGTTGTAGATGT720.14483424525265529No Hit
AGTAACGTCGGGGCATTCCGGATAGGCCGAGAAAGTGTTGTGGGAAGAAAGTTAGATTTACGC700.14081107177341487No Hit
ATTTACGCCGATGAATATGATAGTGAAATGGATTTTGGCGTAGGTTTGGTCTAGGGTGTAGCC700.14081107177341487No Hit
CTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGCTCGCACTGATTTTTTACCTGAGTAG700.14081107177341487No Hit
TGATGGTAAGGGAGGGATCGTTGACCTCGTCTGTTATGTAAAGGATGCGTAGGGATGGGAGGG690.13879948503379466No Hit
AACTTACTACTCCGGAAAAAAAGAACCATTTGGATACATAGGTATGGTCTGAGCTATGATATC690.13879948503379466No Hit
TAGTCACTCCAGGTTTATGGAGGGTTCTTCTACTATTAGGACTTTTCGCTTTGAAGCGAAGGC680.13678789829417443No Hit
TTTCTTCCCACAACACTTTCTCGGCCTATCCGGAATGCCCCGACGTTACTCGGACTACCCCGA680.13678789829417443No Hit
GTCTGTTAGTAGTATAGTGATGCCAGCAGCTAGGACTGGGAGAGATAGGAGAAGTAGGACTGC670.13477631155455425No Hit
TACGCCAAAATCCATTTCACTATCATATTCATCGGCGTAAATCTAACTTTCTTCCCACAACAC660.132764724814934No Hit
GGTAGGGTGGGGGGCATCCATATAGTCACTCCAGGTTTATGGAGGGTTCTTCTACTATTAGGA660.132764724814934No Hit
CCGAGTAACGTCGGGGCATTCCGGATAGGCCGAGAAAGTGTTGTGGGAAGAAAGTTAGATTTA660.132764724814934No Hit
CCTGCTCCGGCCTCCACTATAGCAGATGCGAGCAGGAGTAGGAGAGAGGGAGGTAAGAGTCAG650.1307531380753138No Hit
GATAGGCCGAGAAAGTGTTGTGGGAAGAAAGTTAGATTTACGCCGATGAATATGATAGTGAAA650.1307531380753138No Hit
TGTCGTGTAGTACGATGTCTAGTGATGAGTTTGCTAATACAATGCCAGTCAGGCCACCTACGG640.1287415513356936No Hit
AGCATATTTCACCTCCGCTACCATAATCATCGCTATCCCCACCGGCGTCAAAGTATTTAGCTG640.1287415513356936No Hit
CTTTTCGCTTTGAAGCGAAGGCTTCTCAAATCATGAAAATTATTAATATTACTGCTGTTAGAG640.1287415513356936No Hit
CGAGTAACGTCGGGGCATTCCGGATAGGCCGAGAAAGTGTTGTGGGAAGAAAGTTAGATTTAC630.12672996459607339No Hit
TTCTTCGACCCCGCCGGAGGAGGAGACCCCATTCTATACCAACACCTATTCTGATTTTTCGGT630.12672996459607339No Hit
CCCCTCTTCGTCTGATCCGTCCTAATCACAGCAGTCCTACTTCTCCTATCTCTCCCAGTCCTA620.12471837785645316No Hit
AAAATCTGTTCGCTTCATTCATTGCCCCCACAATCCTAGGCCTACCCGCCGCAGTACTGATCA620.12471837785645316No Hit
TTCTCCTATCTCTCCCAGTCCTAGCTGCTGGCATCACTATACTACTAACAGACCGCAACCTCA610.12270679111683297No Hit
TCTGCATCAACTGAACGCAAATCAGCCACTTTAATTAAGCTAAGCCCTTACTAGACCAATGGG600.12069520437721275No Hit
ATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAATGACCTCCG590.11868361763759253No Hit
GGAAATAGAAACCGTCTGAACTATCCTGCCCGCCATCATCCTAGTCCTCATCGCCCTCCCATC590.11868361763759253No Hit
AATCACCACCCAACAATGACTAATCAAACTAACCTCAAAACAAATGATAACCATACACAACAC590.11868361763759253No Hit
TATTAGTTAGTTTTGTTGTGAGTGTTAGGAAAAGGGCATACAGGACTAGGAAGCAGATAAGGA580.11667203089797233No Hit
ATTGTTGGGTGGTGATTAGTCGGTTGTTGATGAGATATTTGGAGGTGGGGATCAATAGAGGGG580.11667203089797233No Hit
GATTTCCCCTATTCTCAGGCTACACCCTAGACCAAACCTACGCCAAAATCCATTTCACTATCA580.11667203089797233No Hit
ACGCTCAGGAAATAGAAACCGTCTGAACTATCCTGCCCGCCATCATCCTAGTCCTCATCGCCC580.11667203089797233No Hit
ATAGGCCGAGAAAGTGTTGTGGGAAGAAAGTTAGATTTACGCCGATGAATATGATAGTGAAAT580.11667203089797233No Hit
ACTAGACATCGTACTACACGACACGTACTACGTTGTAGCCCACTTCCACTATGTCCTATCAAT570.11466044415835211No Hit
TCGGGGGCACCGATTATTAGGGGAACTAGTCAGTTGCCAAAGCCTCCGATTATGATGGGTATT560.11264885741873189No Hit
CGCCACACTCCACGGAAGCAATATGAAATGATCTGCTGCAGTGCTCTGAGCCCTAGGATTCAT560.11264885741873189No Hit
CCAGCTTTGGGGGGTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGGGTTCTTCGA550.11063727067911168No Hit
AGATGTGGTCGTTACCTAGAAGGTTGCCTGGCTGGCCCAGCTCGGCTCGAATAAGGAGGCTTA550.11063727067911168No Hit
ATGTCCTATCAATAGGAGCTGTATTTGCCATCATAGGAGGCTTCATTCACTGATTTCCCCTAT550.11063727067911168No Hit
GCCCTCCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCCTTACCATC540.10862568393949147No Hit
AACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGAGCTGGAGTCCTAGGCACA540.10862568393949147No Hit
CTAGACATCGTACTACACGACACGTACTACGTTGTAGCCCACTTCCACTATGTCCTATCAATA530.10661409719987125No Hit
GCAGTGCTCTGAGCCCTAGGATTCATCTTTCTTTTCACCGTAGGTGGCCTGACTGGCATTGTA530.10661409719987125No Hit
ATCAATTGGCTTCCTAGGGTTTATCGTGTGAGCACACCATATATTTACAGTAGGAATAGACGT530.10661409719987125No Hit
TCCGGCGGGGTCGAAGAAGGTGGTGTTGAGGTTGCGGTCTGTTAGTAGTATAGTGATGCCAGC530.10661409719987125No Hit
CTCACAACAAAACTAACTAATACTAACATCTCAGACGCTCAGGAAATAGAAACCGTCTGAACT520.10460251046025104No Hit
TTCCCCGCATAAACAACATAAGCTTCTGACTCTTACCTCCCTCTCTCCTACTCCTGCTCGCAT520.10460251046025104No Hit
AAGTTACAATATGGGAGATTATTCCGAAGCCTGGTAGGATAAGAATATAAACTTCAGGGTGAC520.10460251046025104No Hit
TACAACGTAGTACGTGTCGTGTAGTACGATGTCTAGTGATGAGTTTGCTAATACAATGCCAGT520.10460251046025104No Hit
CGTCCGGGAATTGCATCTGTTTTTAAGCCTAATGTGGGGACAGCTCATGAGTGCAAGACGTCT520.10460251046025104No Hit
AAGGTTGCCTGGCTGGCCCAGCTCGGCTCGAATAAGGAGGCTTAGAGCTGTGCCTAGGACTCC510.10259092372063083No Hit
CTCCTCCGGCGGGGTCGAAGAAGGTGGTGTTGAGGTTGCGGTCTGTTAGTAGTATAGTGATGC510.10259092372063083No Hit
TCACCTCCGCTACCATAATCATCGCTATCCCCACCGGCGTCAAAGTATTTAGCTGACTCGCCA510.10259092372063083No Hit
TATACGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAGGTTTATG510.10259092372063083No Hit
CCTAGGAAGCCAATTGATATCATAGCTCAGACCATACCTATGTATCCAAATGGTTCTTTTTTT500.10057933698101063No Hit
GTGTACTCGTAGGTTCAGTACCATTGGTGGCCAATTGATTTGATGGTAAGGGAGGGATCGTTG500.10057933698101063No Hit
CTTCAGGGTGACCGAAAAATCAGAATAGGTGTTGGTATAGAATGGGGTCTCCTCCTCCGGCGG500.10057933698101063No Hit
GGTAAAAGGCTCAGAAAAATCCTGCGAAGAAAAAAACTTCTGAGGTAATAAATAGGATCATCC500.10057933698101063No Hit
TGTGCTTTCTCGTGTTACATCGCGCCATCATTGGTATATGGTTAGTGTGTTGGTTAGTAGGCC500.10057933698101063No Hit

[OK]Adapter Content

Adapter graph