Research Object Crate for VVV2_align_PE

PAIRED-END workflow. Align reads on fasta reference/assembly using bwa mem, get a consensus, variants, mutation explanations. IMPORTANT: * For "bcftools call" consensus step, the --ploidy file is in "Données partagées" (Shared Data) and must be imported in your history to use the worflow by providing this file (tells bcftools to consider haploid variant calling). * SELECT THE MOST ADAPTED VADR MODEL for annotation (see vadr parameters).

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License

GPL-3.0

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