Research Object Crate for Metagenomics workflow

Original URL: https://workflowhub.eu/workflows/64/ro_crate?version=7

Workflow for Metagenomics from raw reads to annotated bins. Steps: - workflow_quality.cwl: - FastQC (control) - fastp (trimming) - Kraken2 (Taxonomic Read Classification - SPAdes (Assembly) - QUAST (Assembly quality report) - BBmap (Read mapping to assembly) - sam_to_bam (sam to indexed bam) - metabatContigDepths (jgi_summarize_bam_contig_depths) - MetaBat2 (binning)

Author
Jasper Koehorst, Bart Nijsse
License
CC0-1.0

Contents

Main Workflow: Metagenomics workflow
Size: 11066 bytes
Main Workflow Diagram: workflow-64-f3919f225bcea97b6b0c10750c8acb34841a52f1-diagram.svg
Size: 43887 bytes