Workflows

What is a Workflow?

1 Workflow matching the given criteria: (Clear all filters)

Tool:

scanpy-clustering/main

Intergalactic Workflow Commission (IWC)

Tests Passing

Single-cell RNA-seq workflow with Scanpy and Anndata. Based on the 3k PBMC clustering tutorial from Scanpy. It takes count matrix, barcodes and feature files as input and creates an Anndata object out of them. It then performs QC and filters for lowly expressed genes and cells. Then the data is normalized and scaled. Then PCs are computed to further cluster using louvain algorithm. It also generated various plots of clustering colored with highly ranked genes.

Type: Galaxy

Creators: Pavankumar Videm, Hans-Rudolf Hotz, Mehmet Tekman, Bérénice Batut

Submitter: WorkflowHub Bot

Created: 26th Jan 2025 at 03:01

Workflows

Filters ×

Filters