Workflows

What is a Workflow?
831 Workflows visible to you, out of a total of 904
End-to-end EI+ mass spectra prediction workflow using QCxMS
Stable

High-Performance Computing (HPC) environments are integral to quantum chemistry and computationally intense research, yet their complexity poses challenges for non-HPC experts. Navigating these environments proves challenging for researchers lacking extensive computational knowledge, hindering efficient use of domain specific research software. The prediction of mass spectra for in silico annotation is therefore inaccessible for many wet lab scientists. Our main goal is to facilitate non-experts ...

Type: Galaxy

Creators: Zargham Ahmad, Helge Hecht, Wudmir Rojas, RECETOX SpecDat

Submitters: Helge Hecht, Wudmir Rojas

DOI: 10.48546/workflowhub.workflow.897.3

nf-core/demultiplex

GitHub Actions CI Status GitHub Actions Linting StatusAWS CI[![Cite ...

Type: Nextflow

Creators: Chelsea Sawyer, Edmund Miller, Matthias De Smet

Submitter: WorkflowHub Bot

Barcode Gene Extractor & Evaluator (BGEE) Snakemake workflow

Barcode Gene Extractor & Evaluator (BGEE) Snakemake workflow

Snakemake workflow for recovering high-quality barcode sequences from genome skim data, built around MitoGeneExtractor and adapted for genome skims of museum specimens.

Contents

Type: Snakemake

Creator: Dan Parsons

Submitter: Dan Parsons

Barcode Gene Extractor & Evaluator (BGEE) Snakemake workflow

Barcode Gene Extractor & Evaluator (BGEE) Snakemake workflow

Snakemake workflow for recovering high-quality barcode sequences from genome skim data, built around MitoGeneExtractor and adapted for genome skims of museum specimens.

Contents

Type: Snakemake

Creator: Dan Parsons

Submitter: Dan Parsons

Laserfarm Jupyter Notebooks for Reserve Naturelle Nationale du Bagnas
Stable

Laserfarm (https://doi.org/10.1016/j.ecoinf.2022.101836) is a high-throughput workflow for generating geospatial data products of ecosystem structure using LiDAR point clouds from national or regional airborne laser scanning (ALS) surveys. The workflow example here shows the application of the Laserfarm workflow to the 7.5 km2 large Reserve Naturelle Nationale du Bagnas ('Bagnas') in France (3.514360 E, 43.314332 N). The work has been performed in the context of the EU project MAMBO (Modern ...

Type: Jupyter

Creators: W. Daniel Kissling, Wessel Mulder, Jinhu Wang, Yifang Shi

Submitter: W. Daniel Kissling

DOI: 10.48546/workflowhub.workflow.1297.1

Laserfarm Jupyter Notebooks for Comino
Stable

Laserfarm (https://doi.org/10.1016/j.ecoinf.2022.101836) is a high-throughput workflow for generating geospatial data products of ecosystem structure using LiDAR point clouds from national or regional airborne laser scanning (ALS) surveys. The workflow example here shows the application of the Laserfarm workflow to the 3.5 km2 large island of Comino in Malta (36.0113 E, 14.3362 N). The work has been performed in the context of the EU project MAMBO (Modern Approaches to the Monitoring of Biоdiversity, ...

Type: Jupyter

Creators: W. Daniel Kissling, Wessel Mulder, Jinhu Wang, Yifang Shi

Submitter: W. Daniel Kissling

DOI: 10.48546/workflowhub.workflow.1298.1

Laserfarm Jupyter Notebooks for Knepp Estate
Stable

Laserfarm (https://doi.org/10.1016/j.ecoinf.2022.101836) is a high-throughput workflow for generating geospatial data products of ecosystem structure using LiDAR point clouds from national or regional airborne laser scanning (ALS) surveys. The workflow example here shows the application of the Laserfarm workflow to the 5.55 km2 large Knepp Estate in the United Kingdom (0.3758 W, 50.969859 N). The work has been performed in the context of the EU project MAMBO (Modern Approaches to the Monitoring ...

Type: Jupyter

Creators: W. Daniel Kissling, Wessel Mulder, Jinhu Wang, Yifang Shi

Submitter: W. Daniel Kissling

DOI: 10.48546/workflowhub.workflow.1299.1

Laserfarm Jupyter Notebooks for Mols Bjerge National Park
Stable

Laserfarm (https://doi.org/10.1016/j.ecoinf.2022.101836) is a high-throughput workflow for generating geospatial data products of ecosystem structure using LiDAR point clouds from national or regional airborne laser scanning (ALS) surveys. The workflow example here shows the application of the Laserfarm workflow to the 1.29 km2 large Mols Bjerge National Park in Denmark (10.478393 E, 56.289050 N). The work has been performed in the context of the EU project MAMBO (Modern Approaches to the Monitoring ...

Type: Jupyter

Creators: W. Daniel Kissling, Wessel Mulder, Jinhu Wang, Yifang Shi

Submitter: W. Daniel Kissling

DOI: 10.48546/workflowhub.workflow.1300.1

Laserfarm Jupyter Notebooks for Monks Wood
Stable

Laserfarm (https://doi.org/10.1016/j.ecoinf.2022.101836) is a high-throughput workflow for generating geospatial data products of ecosystem structure using LiDAR point clouds from national or regional airborne laser scanning (ALS) surveys. The workflow example here shows the application of the Laserfarm workflow to the 0.08 km2 large Monks Wood in the United Kingdom (10.478393 E, 56.289050 N). The work has been performed in the context of the EU project MAMBO (Modern Approaches to the Monitoring ...

Type: Jupyter

Creators: W. Daniel Kissling, Wessel Mulder, Jinhu Wang, Yifang Shi

Submitter: W. Daniel Kissling

DOI: 10.48546/workflowhub.workflow.1301.1

Laserfarm Jupyter Notebooks for Oostvaardersplassen
Stable

Laserfarm (https://doi.org/10.1016/j.ecoinf.2022.101836) is a high-throughput workflow for generating geospatial data products of ecosystem structure using LiDAR point clouds from national or regional airborne laser scanning (ALS) surveys. The workflow example here shows the application of the Laserfarm workflow to the 54 km2 large Oostvaardersplassen in the Netherlands (5.418842 E, 52.456870 N). The work has been performed in the context of the EU project MAMBO (Modern Approaches to the Monitoring ...

Type: Jupyter

Creators: W. Daniel Kissling, Wessel Mulder, Jinhu Wang, Yifang Shi

Submitter: W. Daniel Kissling

DOI: 10.48546/workflowhub.workflow.1302.1

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