Workflows

What is a Workflow?
1267 Workflows visible to you, out of a total of 1349
Stable

From Obis data to Biodiversity indicators

Associated Tutorial

This workflows is part of the tutorial Obis marine indicators, available in the GTN

Features

Thanks to...

Workflow Author(s): Marie Jossé

Tutorial Author(s): ...

Type: Galaxy

Creators: Marie Jossé, Yvan Le Bras

Submitter: GTN Bot

Stable

Secondary metabolite biosynthetic gene cluster (SMBGC) Annotation using Neural Networks Trained on Interpro Signatures

Associated Tutorial

This workflows is part of the tutorial Marine Omics identifying biosynthetic gene clusters, available in the GTN

Features

Type: Galaxy

Creator: Marie Jossé

Submitter: GTN Bot

DOI: 10.48546/workflowhub.workflow.1663.1

Stable

Associated Tutorial

This workflows is part of the tutorial From NDVI data with OpenEO to time series visualisation with Holoviews, available in the GTN

Features

Thanks to...

Workflow Author(s): Marie Jossé

**Tutorial ...

Type: Galaxy

Creator: Marie Jossé

Submitter: GTN Bot

DOI: 10.48546/workflowhub.workflow.1714.1

Stable

This workflow allows you to annotate a genome with Helixer and evaluate the quality of the annotation using BUSCO and Genome Annotation statistics. GFFRead is also used to predict protein sequences derived from this annotation, and BUSCO and OMArk are used to assess proteome quality.

Associated Tutorial

This workflows is part of the tutorial Genome annotation with Helixer, available ...

Stable

Refining Genome Annotations with Apollo

Associated Tutorial

This workflows is part of the tutorial Refining Genome Annotations with Apollo (prokaryotes), available in the GTN

Thanks to...

Tutorial Author(s): Anthony Bretaudeau, [Helena ...

Stable

Masking repeats in a genome using RepeatMasker

Associated Tutorial

This workflows is part of the tutorial Masking repeats with RepeatMasker, available in the GTN

Features

Thanks to...

Workflow Author(s): Anthony ...

Stable

Structural and functional genome annotation with Funannotate

Associated Tutorial

This workflows is part of the tutorial Genome annotation with Funannotate, available in the GTN

Features

Thanks to...

**Workflow ...

Type: Galaxy

Creator: Anthony Bretaudeau

Submitter: GTN Bot

DOI: 10.48546/workflowhub.workflow.1525.1

Stable

Functional annotation of protein sequences

Associated Tutorial

This workflows is part of the tutorial Functional annotation of protein sequences, available in the GTN

Features

Thanks to...

Workflow Author(s): ...

Type: Galaxy

Creator: Anthony Bretaudeau

Submitter: GTN Bot

DOI: 10.48546/workflowhub.workflow.1521.1

Stable

The idea of this workflow is to compare annotation with two annotation tools that differ in their approach and operation.

Associated Tutorial

This workflows is part of the tutorial Comparison of two annotation tools - Helixer and Braker3, available in the GTN

Features

  • Includes [Galaxy Workflow ...

Type: Galaxy

Creator: Romane Libouban

Submitter: GTN Bot

DOI: 10.48546/workflowhub.workflow.1746.1

Stable

Associated Tutorial

This workflows is part of the tutorial Finding the muon stopping site with pymuon-suite in Galaxy, available in the GTN

Features

Thanks to...

Workflow Author(s): Muon ...

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