Workflows
What is a Workflow?Filters
This workflow runs the FEELnc tool to annotate long non-coding RNAs. Before annotating these long non-coding RNAs, StringTie will be used to assemble the RNA-seq alignments into potential trancriptions. The gffread tool provides a genome annotation file in GTF format.
This workflow allows for genome annotation using Maker and evaluates the quality of the annotation.
Tests This workflow allows you to annotate a genome with Helixer and evaluate the quality of the annotation using BUSCO and Genome Annotation statistics. GFFRead is also used to predict protein sequences derived from this annotation, and BUSCO and OMArk are used to assess proteome quality.
Alignment, assembly and annotation of RNQSEQ reads using TOPHAT (without filtering out host reads).
DownloadAlignment, assembly and annotation of RNASEQ reads as well as annotation of generated transcripts.
Alignment, assembly and annotation of generated transcripts from RNASEQ reads.
