EuroScienceGateway

ELIXIR is an intergovernmental organisation that brings together life science resources from across Europe. These resources include databases, software tools, training materials, cloud storage and supercomputers.

The goal of ELIXIR is to coordinate these resources so that they form a single infrastructure. This infrastructure makes it easier for scientists to find and share data, exchange expertise, and agree on best practices. Ultimately, it will help them gain new insights into how living ...

The EuroScienceGateway project is producing and maintaining workflows. We need to register those workflows in WorkflowHub:

• To give visibility to the workflows created by the project and by the different networks and communities within the project
• To give visibility to the workflows used by project that were created
• To share workflows across the project, within project networks and externally
• To credit and cite the people making the workflows and the ...

To make your workflow FAIR (Findable, Accessible, Interoperable, Reusable), register it in WorkflowHub, a workflow registry with rich metadata capture for workflow discovery and sharing, and value-added services, for workflow testing (LifeMonitor), execution and publication.

The EuroScienceGateway, Biodiversity Genomics Europe and BioDT projects will use WorkflowHub to organise, share and publish their workflows.

This was Ask Me Anything and Bring Your Own Workflow (AMA & BYOW) specifically ...

Galaxy workflow for the reproduction of the results published in: Panchal, Monik, Callison, June, Skukauskas, Vainius, Gianolio, Diego, Cibin, Giannantonio, York, Andrew P E, Schuster, Manfred E, Hyde, Timothy I, Collier, Paul, Catlow, C Richard A, Gibson, Emma K (2021) Operando XAFS investigation on the effect of ash deposition on three-way catalyst used in gasoline particulate filters and the effect of the manufacturing process on the catalytic activity DOI: 10.1088/1361-648x/abfe16.

This ...

Galaxy workflow for the reproduction of the results published in: R. H. Blackmore, M. E. Rivas, G. F. Tierney, K. M. H. .Mohammed, D. Decarolis, S. Hayama, F. Venturini, G. Held, R. Arrigo, M. Amboage, P. Hellier, E. W. Lynch, M. Amri, M. Casavola, T. Eralp Erden, P. Collier, P. P. Wells (2020) The electronic structure, surface properties, and in situ N2O decomposition of mechanochemically synthesised LaMnO3 DOI: 10.1039/d0cp00793e.

This workflow is published as part of the research data submitted ...

Galaxy workflow for the reproduction of the results published in: S. K. Matam, C. Moffat, P. Hellier, M. Bowker, I. P. Silverwood, C. R. A. .Catlow, S. D. Jackson, J. Craswell, P. P. Wells, S. F. Parker, E. K. Gibson (2021). Investigation of MoOx/Al2O3 under Cyclic Operation for Oxidative and Non-Oxidative Dehydrogenation of Propane DOI: 10.3390/catal10121370.

This workflow is published as part of the research data submitted for the paper Facilitating Reproducibility in Catalysis Research with ...

Galaxy workflow for the reproduction of the results published in: D. Decarolis, A. H. Clark, T. Pellegrinelli, M. Nachtegaal, E. W. Lynch, C. R. A. .Catlow, E. K. Gibson, A. Goguet, P. P. Wells (2021). Spatial Profiling of a Pd/Al2O3 Catalyst during Selective Ammonia Oxidation DOI: 10.1021/acscatal.0c05356.

This workflow is published as part of the research data submitted for the paper Facilitating Reproducibility in Catalysis Research with Managed Workflows and RO-Crates: A Galaxy Case Study, ...

Galaxy workflow for the reproduction of the results published in: R. H. Blackmore, M. E. Rivas, T. Eralp Erden, T. Dung Tran, H. R. Marchbank, D. Ozkaya, M. Briceno de Gutierrez, A. Wagland, P. Collier, P. P. Wells (2018). Understanding the mechanochemical synthesis of the perovskite LaMnO3 and its catalytic behaviour DOI: 10.1039/C9DT03590G.

This workflow is published as part of the research data submitted for the paper Facilitating Reproducibility in Catalysis Research with Managed Workflows ...

Galaxy workflow for with the reproduction of the results published in: C. Stewart, E. K. Gibson, K. Morgan, G. Cibin, A. J. Dent, C. Hardacre, E. V. Kondratenko, V. A. Kondratenko, C. McManus, S. M. Rogers, C. E. Stere, S. Chansai, Y. -C. Wang, S. J. Haigh, P. P. Wells, A. Goguet (2018). Unraveling the H2Promotional Effect on Palladium-Catalyzed CO Oxidation Using a Combination of Temporally and Spatially Resolved Investigations DOI: 10.1021/acscatal.8b01509.

This workflow is published as part ...

Galaxy workflow for the reproduction of the results published in: George F. Tierney, Donato Decarolis, Norli Abdullah, Scott M. Rogers, Shusaku Hayama, Martha Briceno de Gutierrez, Alberto Villa, C. Richard A. Catlow, Paul Collier, Nikolaos Dimitratos and Peter P. Wells (2019) Extracting structural information of Au colloids at ultra-dilute concentrations: identification of growth during nanoparticle immobilization. Nanoscale Advances. V. 1. pp. 2546-2552. DOI: 10.1039/C9NA00159J.

This workflow ...

Galaxy workflow for the reproduction of the results published in: Antonis M. Messinis, Stephen L. J. Luckham, Peter P. Wells, Diego Gianolio, Emma K. Gibson, Harry M. O’Brien, Hazel A. Sparkes, Sean A. Davis, June Callison, David Elorriaga, Oscar Hernandez-Fajardo & Robin B. Bedford (2019) The highly surprising behaviour of diphosphine ligands in iron-catalysed Negishi cross-coupling Nature Catalysis, 2019, 2, 123-133 DOI: 10.1038/s41929-018-0197-z.

This workflow is published as part of the ...

Galaxy workflow for the reproduction of the results published in: H. Huang, A. B. A. A. Nassr, V. Celorrio, S. F. R. Taylor, V. K. Puthiyapura, C. Hardacre, D. J. L. Brett, A. E. Russell. (2018) Effects of heat treatment atmosphere on the structure and activity of Pt3Sn nanoparticle electrocatalysts: a characterisation case study. Faraday Discussions. V. 208. pp. 555-573. DOI: 10.1039/c7fd00221a.

This workflow is published as part of the research data submitted for the paper Facilitating ...

Modified workflow to perform Voronoi segmentation, based on https://usegalaxy.eu/published/workflow?id=23030421cd9fcfb2.

Input requirements:

• RA: -- right ascension in degrees as a float number.
• Dec: -- Declination in degrees as a float number
• Radius: -- the radius of the cone to be queried in arcminutes as a float number
• Pixel size: -- the size of the pixel in arcseconds
• Band: -- the band (channel) of the image: g, r, z, i

This workflow provides a calculaiton of the power spectrum of Stochastic Gravitational Wave Backgorund (SGWB) from a first-order cosmological phase transition based on the parameterisations of Roper Pol et al. (2023). The power spectrum includes two components: from the sound waves excited by collisions of bubbles of the new phase and from the turbulence that is induced by these collisions.

The cosmological epoch of the phase transition is described by the temperature, T_star and by the number(s) ...

The tool provides a calculation of the power spectrum of Stochastic Gravitational Wave Backgorund (SGWB) from a first-order cosmological phase transition based on the parameterisations of Roper Pol et al. (2023). The power spectrum includes two components: from the sound waves excited by collisions of bubbles of the new phase and from the turbulence that is induced by these collisions.

The cosmological epoch of the phase transition is described by the temperature, T_star and by the number(s) of ...

Protype demonstrator of a workflow reducing HESS and INTEGRAL/SPI-ACS data to common Light Curve format and combining the lightcurves into a multi-wavelength observation.

Refining Genome Annotations with Apollo

NDVI data with OpenEO to time series visualisation with HoloViz

Calculating and visualizing marine biodiversity indicators

Finding potential muon stopping sites in crystalline copper

From Copernicus Sentinel 5P data to panoply visualization of volcanic activity impact to atmosphere

Functional annotation of protein sequences

Collection of workflows used or developed by the EuroScienceGateway project.