Expertise: High Performance Computing, Scientific workflow developement, Software Engineering, astronomy
Tools: Galaxy, Jupyter notebook, Python, Workflows, Git
Research Interest: Bioinformatics | Deep Learning | DevOps | Generative AI | Knowledge Graphs. Highly communicative, task oriented, feature responsive, time oriented, approachable, solution seeker and initiative taker focussed professional working across a wide variety of topics which includes bioinformatics involving genomes, transcriptomes, metagenomes and metatranscriptomes focussing on datasets coming from the plant, bacterial and fungal genome (Illumina Miseq, NextSeq, NovaSeq, PacBio, Oxford ...
Teams: WP5 - Volcanoes, COMPSs Tutorials
Organizations: Geosciences Barcelona (GEO3BCN-CSIC)
https://orcid.org/0000-0001-8723-4368Expertise: Computer Science, Scientific workflow developement
Expertise: Bioinformatics, Genomics, Scientific workflow developement
Teams: BSC-CES, COMPSs Tutorials
Organizations: Barcelona Supercomputing Center (BSC-CNS)
https://orcid.org/0000-0001-8250-4074Expertise: Scientific workflow developement, workflow managers, Software Engineering, open source, fuzzy logic, graphs
Tools: CWL, Autosubmit, Cylc, ecFlow
Research Engineer (Workflow Engineer) at the Barcelona Supercomputing Center (BSC) in Barcelona, Spain. Working on the Autosubmit workflow manager.
Previously NIWA/Cylc, and Curii/CWL.
I am a bioinformatician and phylogenetics. I really love working on problems at the intersection of high-performance computing and scientific workflows applied to omics
Expertise: Bioinformatics, Computer Science, Data Management, Genetics, Genomics, Machine Learning, Metagenomics, NGS, Scientific workflow developement, Software Engineering
Tools: Databases, Galaxy, Genomics, Jupyter notebook, Machine Learning, Nextflow, nf-core, PCR, Perl, Python, R, rtPCR, Snakemake, Transcriptomics, Virology, Web, Web services, Workflows
Dad, husband and PhD. Scientist, technologist and engineer. Bibliophile. Philomath. Passionate about science, medicine, research, computing and all things geeky!
Research Director @ INRAe