WorkflowHub

11 items tagged with 'Metagenomics'.

People (11)

Saim Momin

Teams: Not specified

Organizations: Not specified

https://orcid.org/0009-0003-9935-828X

Expertise: Bioinformatics, Metagenomics, NGS, Scientific workflow developement, Software Engineering

Tools: Conda, Jupyter notebook, Python, R, Single Cell analysis, Snakemake

Bram Danneels

Teams: EBP-Nor

Organizations: University of Bergen

https://orcid.org/0000-0001-7446-8325

Expertise: Genomics, Metagenomics, NGS, Python, evolution

Tools: Genomics, Python, Snakemake, Transcriptomics

Naser Elmi

Teams: Cimorgh IT solutions

Organizations: cimorgh IT

Expertise: Bioinformatics, Genomics, Metagenomics, Microbiology, NGS, Python, R, bash, WDL

Tools: Mathematical Modelling, R, WDL

Vincent Hervé

Teams: Metagenomic tools

Organizations: INRAe

https://orcid.org/0000-0002-3495-561X

Expertise: Bioinformatics, Metabarcoding, Metagenomics, Microbiology

Bart Nijsse

Teams: UNLOCK

Organizations: UNLOCK

https://orcid.org/0000-0001-9524-5964

Expertise: Metagenomics

Tools: CWL, Workflows

Juan Caballero

Teams: MGnify

Organizations: EMBL-EBI

https://orcid.org/0000-0002-6160-3644

Expertise: Bioinformatics, Genomics, Metagenomics, Data Management

Tools: CWL, Jupyter notebook, Nextflow, Molecular Biology, Workflows, Microbiology, Transcriptomics, Perl, Python, R

Haris Zafeiropoulos

Teams: emo-bon

Organizations: IMBBC-HCMR

https://orcid.org/0000-0002-4405-6802

Expertise: Metagenomics, amplicon analysis, Microbiology, Systems Biology

Tools: CWL

I am a bioinformatician working on microbial ecology and ecosystem functioning at the microbial dimension.

Stephen Moss

Teams: Not specified

Organizations: Not specified

https://orcid.org/0000-0002-1399-293X

Expertise: Bioinformatics, Computer Science, Data Management, Genetics, Genomics, Machine Learning, Metagenomics, NGS, Scientific workflow developement, Software Engineering

Tools: Databases, Galaxy, Genomics, Jupyter notebook, Machine Learning, Nextflow, nf-core, PCR, Perl, Python, R, rtPCR, Snakemake, Transcriptomics, Virology, Web, Web services, Workflows

Dad, husband and PhD. Scientist, technologist and engineer. Bibliophile. Philomath. Passionate about science, medicine, research, computing and all things geeky!

Julie Ripoll

Teams: MAB - ATGC

Organizations: Centre National de la Recherche Scientifique (CNRS)

https://orcid.org/0000-0003-1590-8313

Expertise: Bioinformatics, Biostatistics, Bioengineering, Metagenomics, Scientific workflow developement, Data Management, Systems Biology, Ecophysiology

Tools: Transcriptomics, Python, Workflows, Snakemake, R, Conda, Jupyter notebook, Java, Web, Machine Learning, Databases

eric.rivals@lirmm.fr Rivals

Teams: MAB - ATGC

Organizations: Centre National de la Recherche Scientifique (CNRS)

https://orcid.org/0000-0003-3791-3973

Expertise: Bioinformatics, Genomics, algorithm, Machine Learning, Metagenomics, NGS, Computer Science

Tools: Transcriptomics, Genomics, Python, C/C++, Web services, Workflows

Cyril Noel

Teams: SeBiMER

Organizations: IFREMER

https://orcid.org/0000-0002-7139-4073

Expertise: Bioinformatics, Biostatistics, Metabarcoding, Metagenomics

Tools: Workflows, Nextflow, R