nf-core
OverviewA community effort to collect a curated set of analysis pipelines built using Nextflow.
Space: nf-core
SEEK ID: https://workflowhub.eu/projects/15
Public web page: https://nf-co.re
Organisms: No Organisms specified
WorkflowHub PALs: No PALs for this Team
Team created: 22nd Jul 2020
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Related items
Teams: Intergalactic Workflow Commission (IWC), Vertebrate Genomes Pipelines in Galaxy, nf-core
Organizations: Bots, European Galaxy Team
Teams: nf-core
Organizations: National University of Ireland, Galway
Teams: nf-core
Organizations: Centre for Genomic Regulation (CRG)
https://orcid.org/0000-0002-1541-042X
Bioinformatician in Stockholm, Sweden. Lead for nf-core and MultiQC projects.
Teams: nf-core
Organizations: yale university
Teams: nf-core, usegalaxy-eu
Organizations: German Cancer Research Center (DKFZ)
https://orcid.org/0000-0002-3651-5685
Teams: nf-core
Organizations: Centre for Genomic Regulation (CRG)
https://orcid.org/0000-0001-6104-9260
A community effort to collect a curated set of analysis pipelines built using Nextflow.
Teams: nf-core
Web page: https://nf-co.re
ROR ID: Not specified
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Department: Centre for biodiversity and the environment
Country: Not specified
City: London
Web page: http://www.ucl.ac.uk/
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Spain
City: Barcelona
Web page: https://www.crg.eu/roderic_guigo
ROR ID: Not specified
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Germany
City: Heidelberg
Web page: https://www.dkfz.de/en
ROR ID: Not specified
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India
City: Manauli
Web page: http://iisermohali.ac.in/
ROR ID: Not specified
Department: Not specified
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Ireland
City: Galway
Web page: Not specified
ROR ID: Not specified
Department: Not specified
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City: Not specified
Web page: https://nf-co.re
ROR ID: Not specified
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Sweden
City: Not specified
Web page: https://www.scilifelab.se/
ROR ID: Not specified
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United States
City: Not specified
Web page: Not specified
Proteogenomics database creation workflow using pypgatk framework.
Protein 3D structure prediction pipeline
Type: Nextflow
Creators: Athanasios Baltzis, Jose Espinosa-Carrasco, Harshil Patel
Submitter: WorkflowHub Bot
Proteomics label-free quantification (LFQ) analysis pipeline using OpenMS and MSstats, with feature quantification, feature summarization, quality control and group-based statistical analysis.
Type: Nextflow
Creators: Julianus Pfeuffer, Lukas Heumos, Leon Bichmann, Timo Sachsenberg, Yasset Perez-Riverol
Submitter: WorkflowHub Bot
Quantitative Mass Spectrometry nf-core workflow
Alternative splicing analysis using RNA-seq.
An open-source analysis pipeline to detect germline or somatic variants from whole genome or targeted sequencing
SLAMseq analysis using Slamdunk with various T>C conversion quantifications and QC
Small RNA-Seq Best Practice Analysis Pipeline.
Type: Nextflow
Creators: Phil Ewels <[email protected]>, P. Ewels <[email protected]>, P. Ewels, Chuan Wang <[email protected]>, C. Wang <[email protected]>, C. Wang, Rickard Hammarén <[email protected]>, R. Hammarén <[email protected]>, R. Hammarén, Lorena Pantano <[email protected]>, L. Pantano <[email protected]>, L. Pantano
Submitter: WorkflowHub Bot
Integration of viral sequences in genomic data
Assembly and intrahost/low-frequency variant calling for viral samples
Type: Nextflow
Creators: Sarai Varona and Sara Monzon, Patel H, Varona S and Monzon S
Submitter: WorkflowHub Bot
Google DeepVariant variant caller as a Nextflow pipeline
Automated quantitative analysis of DIA proteomics mass spectrometry measurements.
Differential abundance analysis
Dual RNA-seq pipeline
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
Type: Nextflow
Creators: Alexander Peltzer, The nf-core/eager community, Stephen Clayton, James A Fellows-Yates
Submitter: WorkflowHub Bot
Pipeline to fetch metadata and raw FastQ files from public databases
A pipeline to investigate horizontal gene transfer from NGS data
Analysis of Chromosome Conformation Capture data (Hi-C)
This pipeline analyses data for HiCAR data, a robust and sensitive multi-omic co-assay for simultaneous measurement of transcriptome, chromatin accessibility and cis-regulatory chromatin contacts.
