The Galaxy Training Network (GTN) is a collection of hands-on tutorials that are designed to be interactive and are built around Galaxy.
These tutorials can be used for learning and teaching how to use Galaxy for general data analysis, as well as a wide array of hands-on tutorials covering specific domains such as assembly, RNA-Seq analysis, deep learning, climate analysis, and more!
Space: Galaxy
SEEK ID: https://workflowhub.eu/projects/12
Public web page: https://training.galaxyproject.org
Organisms: Homo sapiens, Sars-cov-2
WorkflowHub PALs: No PALs for this Team
Team start date: 1st Sep 2017
Related items
Teams: Galaxy Training Network
Organizations: Galaxy
Teams: Galaxy Training Network
Organizations: Galaxy
I'm a bot managed by @hexylena to upload workflows from the Galaxy Training Network to the WorkflowHub. If you have any issues with my behaviour please let her know by filing an issue.
Teams: usegalaxy-eu, Galaxy Training Network
Organizations: European Galaxy Team

Teams: GalaxyProject SARS-CoV-2, Galaxy Training Network
Organizations: ELIXIR Belgium

Teams: Galaxy Training Network
Organizations: Erasmus University Medical Centre

Expertise: Genomics, amplicon analysis, Microbiology
Tools: Galaxy
Post-doc at ErasmusMC, Galaxy Training Network (GTN) Lead
Teams: Galaxy Training Network
Organizations: European Galaxy Team
Expertise: AI, Biochemistry
Teams: Galaxy Training Network
Organizations: University of Bradford
Teams: Galaxy Training Network
Organizations: University of Bradford

Teams: usegalaxy-eu, Galaxy Training Network, GalaxyProject SARS-CoV-2
Organizations: Galaxy

Teams: Galaxy Training Network, BY-COVID (general), ErasmusMC Clinical Bioinformatics, Seq4AMR
Organizations: Erasmus University Medical Centre

Failure is not an option.
借屍還魂
Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biological research.
- Accessible: Users can easily run tools without writing code or using the CLI; all via a user-friendly web interface.
- Reproducible: Galaxy captures all the metadata from an analysis, making it completely reproducible.
- Transparent: Users share and publish analyses via interactive pages that can enhance analyses with user annotations.
- Scalable: Galaxy can run ...
Teams: Galaxy Training Network
Web page: https://galaxyproject.org/
Compute indicators for Champs blocs
Associated Tutorial
This workflows is part of the tutorial Champs blocs indicators, available in the GTN
Thanks to...
Tutorial Author(s): Marie Josse, Yvan Le Bras ...
Associated Tutorial
This workflows is part of the tutorial Sentinel 2 biodiversity, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): Marie Josse
Tutorial Author(s): [Marie ...
Subset data on the Mediterreanean see and extract and visualise the Phosphate variable
Associated Tutorial
This workflows is part of the tutorial Ocean's variables study, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a [Galaxy ...
Process argo data with the Pangeo Ecosystem and visualise them with Ocean Data View (ODV)
Associated Tutorial
This workflows is part of the tutorial Analyse Argo data, available in the GTN
Thanks to...
Workflow Author(s): Marie Jossé
Tutorial Author(s): Marie Josse ...
From Copernicus Sentinel 5P data to panoply visualization of volcanic activity impact to atmosphere
Associated Tutorial
This workflows is part of the tutorial Sentinel 5P data visualisation, available in the GTN
Thanks to...
Workflow Author(s): Marie Jossé
Tutorial Author(s): Marie Josse ...
Introduction to Deep Learning
Associated Tutorial
This workflows is part of the tutorial Introduction to deep learning, available in the GTN
Thanks to...
Tutorial Author(s): Anup Kumar, Alireza Khanteymoori ...
Associated Tutorial
This workflows is part of the tutorial A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy, available in the GTN
Thanks to...
Tutorial Author(s): Anup Kumar
Tutorial Contributor(s): [Saskia ...
Associated Tutorial
This workflows is part of the tutorial Finding the muon stopping site with pymuon-suite in Galaxy, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): Muon ...
The idea of this workflow is to compare annotation with two annotation tools that differ in their approach and operation.
Associated Tutorial
This workflows is part of the tutorial Comparison of two annotation tools - Helixer and Braker3, available in the GTN
Features
- Includes [Galaxy Workflow ...
Functional annotation of protein sequences
Associated Tutorial
This workflows is part of the tutorial Functional annotation of protein sequences, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): ...
Structural and functional genome annotation with Funannotate
Associated Tutorial
This workflows is part of the tutorial Genome annotation with Funannotate, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
**Workflow ...
Masking repeats in a genome using RepeatMasker
Associated Tutorial
This workflows is part of the tutorial Masking repeats with RepeatMasker, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): Anthony ...
Refining Genome Annotations with Apollo
Associated Tutorial
This workflows is part of the tutorial Refining Genome Annotations with Apollo (prokaryotes), available in the GTN
Thanks to...
Tutorial Author(s): Anthony Bretaudeau, [Helena ...
This workflow allows you to annotate a genome with Helixer and evaluate the quality of the annotation using BUSCO and Genome Annotation statistics. GFFRead is also used to predict protein sequences derived from this annotation, and BUSCO and OMArk are used to assess proteome quality.
Associated Tutorial
This workflows is part of the tutorial Genome annotation with Helixer, available ...
Associated Tutorial
This workflows is part of the tutorial From NDVI data with OpenEO to time series visualisation with Holoviews, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): Marie Jossé
**Tutorial ...
Secondary metabolite biosynthetic gene cluster (SMBGC) Annotation using Neural Networks Trained on Interpro Signatures
Associated Tutorial
This workflows is part of the tutorial Marine Omics identifying biosynthetic gene clusters, available in the GTN
Features
- Includes Galaxy Workflow Tests ...
From Obis data to Biodiversity indicators
Associated Tutorial
This workflows is part of the tutorial Obis marine indicators, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): Marie Jossé
Tutorial Author(s): ...
This workflow uses Braker3 to annotate a genome.
Associated Tutorial
This workflows is part of the tutorial Genome annotation with Braker3, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a [Galaxy Workflow ...
Metatranscriptomics analysis using microbiome RNA-seq data (short)
Associated Tutorial
This workflows is part of the tutorial Metatranscriptomics analysis using microbiome RNA-seq data (short), available in the GTN
Features
- Includes Galaxy Workflow Tests ...
Prediction of HLA binding for verified candidates
Associated Tutorial
This workflows is part of the tutorial Neoantigen 5a: Predicting HLA Binding, available in the GTN
Features
- Includes a Galaxy Workflow Report
Thanks to...
...