Electrophoresis-Gel-Bands-Image-Analysis 1.0
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Run on GalaxyThis workflow performs step-by-step quantification of electrophoresis gel bands by processing QuPath-generated ROI files in Galaxy, automatically measuring band intensity and producing tabular results for visualization.
Associated Tutorial
This workflows is part of the tutorial Quantification of electrophoresis gel bands using QuPath and Galaxy imaging tools, available in the GTN
Features
- Includes a Galaxy Workflow Report
Thanks to...
Workflow Author(s): Reyhaneh Tavakoli-Koopaei, Diana Chiang Jurado
Tutorial Author(s): Reyhaneh Tavakoli, Diana Chiang Jurado
Tutorial Contributor(s): Leonid Kostrykin
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Electropheresis-Gel.jpg | #main/Electropheresis-Gel.jpg | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 1 | Convert coordinates to label map | toolshed.g2.bx.psu.edu/repos/imgteam/points2labelimage/ip_points_to_label/0.4.1+galaxy1 |
| 2 | Convert image format | toolshed.g2.bx.psu.edu/repos/bgruening/graphicsmagick_image_convert/graphicsmagick_image_convert/1.3.45+galaxy0 |
| 3 | Extract image features | toolshed.g2.bx.psu.edu/repos/imgteam/2d_feature_extraction/ip_2d_feature_extraction/0.18.1+galaxy0 |
| 4 | Show image info | toolshed.g2.bx.psu.edu/repos/imgteam/image_info/ip_imageinfo/5.7.1+galaxy1 |
| 5 | Split image along axes | toolshed.g2.bx.psu.edu/repos/imgteam/split_image/ip_split_image/2.2.3+galaxy1 |
| 6 | QuPath | interactive_tool_qupath |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| outputs | #main/outputs | n/a |
|
Version History
master
Creators and Submitter
Views: 36 Downloads: 8 Runs: 0
Created: 11th Aug 2025 at 14:15
AttributionsNone
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