GTN Bot

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About GTN Bot:

I'm a bot managed by @hexylena to upload workflows from the Galaxy Training Network to the WorkflowHub. If you have any issues with my behaviour please let her know by filing an issue.

SEEK ID: https://workflowhub.eu/people/731

Location: Not specified

ORCID: Not specified

Joined: 23rd Apr 2024

Expertise: AI, Workflows

Tools: Python

Their tags

10X Amplicon Arabidopsis Asaim Assembly Big-data Bioimage bioimaging Braker3 BUSCO cancer CellProfiler Cheminformatics Chinese-language Chowell_train_test Classification Climate Clustering Comparison Computational-chemistry Contributing copernicus Cut&run Deeplearning Diff Digitalhumanities Earth-system Ecology epigenetics evolution Exposomics Expospomics Fnn Formulaassignment Fungi Galaxy Galaxy-interface GC-MS genome-annotation Genomeannotation Genomics Geosciences GTN hCNV Helixer hla Humanities IDR Iedb imageanaylsis Imagerecognition imaging Introduction Introductions Iwtomics Jbrowse Lg-wf Llr6_model Logistic_regression_model Loris Lotus2 Ludwig Marineomics Metabolomics Metagenomics Metaplasmidome Mgnify_amplicon microbiome Microgalaxy MIRACUM Mirna Mito-flash Mitochondrion_tracking Ml Mnist Moleculardynamics Multi-omics Name:bacsnp Name:baculoviridae Name:baculovirus Name:by-covid Name:circos Name:clinicalmp name:Collection Name:data-management Name:deconv-eval Name:deconvolution name:ERGA Name:gtn Name:iwc Name:microgalaxy Name:naldv Name:nanopore Name:neoantigen Name:pathogfair Name:scrna-seq Name:sequenceanalysis Name:seurat name:single-cell Name:single_cell Name:singlecell name:training Name:trajectory_analysis Name:transcriptomics Name:viz Noiseestimation Ocean pangeo pathogen Proteomics Pseudobulk Published Pubmed Pubtator QCxMS Recalibration referencegenome Regression Reviewed rna scATAC-seq Segmentation Sempi3 Sequence-analysis single-cell Smfish Statistics synthetic-biology Text Text-mining Text_mining Transcriptomics tuberculosis variant-analysis vgp VGP_curated Visualisation visualization Voronoi yolo

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Galaxy

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biological research.

Accessible: Users can easily run tools without writing code or using the CLI; all via a user-friendly web interface.
Reproducible: Galaxy captures all the metadata from an analysis, making it completely reproducible.
Transparent: Users share and publish analyses via interactive pages that can enhance analyses with user annotations.
Scalable: Galaxy can run ...

Teams: Galaxy Training Network

Web page: https://galaxyproject.org/

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Galaxy Training Network

The Galaxy Training Network (GTN) is a collection of hands-on tutorials that are designed to be interactive and are built around Galaxy.

These tutorials can be used for learning and teaching how to use Galaxy for general data analysis, as well as a wide array of hands-on tutorials covering specific domains such as assembly, RNA-Seq analysis, deep learning, climate analysis, and more!

Space: Galaxy

Public web page: https://training.galaxyproject.org

Start date: 1st Sep 2017

Organisms: Homo sapiens, SARS-CoV-2

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Galaxy

Country: Not specified

City: Not specified

Web page: Not specified

Showing 20 out of a possible 347 Workflows Advanced Workflows list for this Person with search and filtering

MGnify's amplicon pipeline v5.0 - rRNA prediction

Galaxy Training Network

Classification and visualization of SSU, LSU sequences.

Associated Tutorial

This workflows is part of the tutorial MGnify v5.0 Amplicon Pipeline, available in the GTN

Features

Includes a Galaxy Workflow Report
Uses ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

Created: 4th Aug 2025 at 14:16

YOLO training and segmentation workflow

Galaxy Training Network

YOLO based tail analysis workflow for image segmentation and detection. The workflow is based on https://git.embl.org/grp-cba/tail-analysis/-/blob/main/analysis_workflow.md

Associated Tutorial

This workflows is part of the tutorial Training Custom YOLO Models for Object Detection and Segmentation in Bioimages, available in the GTN

...

Type: Galaxy

Creators: None

Submitter: GTN Bot

Created: 28th Jul 2025 at 14:17

Marine Omics visualisation

Galaxy Training Network, EuroScienceGateway

Stable

From Obis data to Biodiversity indicators

Associated Tutorial

This workflows is part of the tutorial Obis marine indicators, available in the GTN

Features

Includes Galaxy Workflow Tests

Thanks to...

Workflow Author(s): Marie Jossé

Tutorial Author(s): ...

Type: Galaxy

Creators: Marie Jossé, Yvan Le Bras

Submitter: GTN Bot

Created: 2nd Jun 2025 at 11:04, Last updated: 28th Jul 2025 at 11:17

Marine Omics identifying biosynthetic gene clusters

Galaxy Training Network, EuroScienceGateway

Stable

Secondary metabolite biosynthetic gene cluster (SMBGC) Annotation using Neural Networks Trained on Interpro Signatures

Associated Tutorial

This workflows is part of the tutorial Marine Omics identifying biosynthetic gene clusters, available in the GTN

Features

Includes Galaxy Workflow Tests ...

Type: Galaxy

Creator: Marie Jossé

Submitter: GTN Bot

DOI: 10.48546/workflowhub.workflow.1663.1

Created: 2nd Jun 2025 at 11:03, Last updated: 28th Jul 2025 at 11:14

NDVI with OpenEO

Galaxy Training Network, EuroScienceGateway

Stable

Associated Tutorial

This workflows is part of the tutorial From NDVI data with OpenEO to time series visualisation with Holoviews, available in the GTN

Features

Includes Galaxy Workflow Tests

Thanks to...

Workflow Author(s): Marie Jossé

**Tutorial ...

Type: Galaxy

Creator: Marie Jossé

Submitter: GTN Bot

DOI: 10.48546/workflowhub.workflow.1714.1

Created: 2nd Jun 2025 at 11:05, Last updated: 28th Jul 2025 at 11:12

annotation_helixer

Galaxy Training Network, EuroScienceGateway

Stable

This workflow allows you to annotate a genome with Helixer and evaluate the quality of the annotation using BUSCO and Genome Annotation statistics. GFFRead is also used to predict protein sequences derived from this annotation, and BUSCO and OMArk are used to assess proteome quality.