Workflows

Classification and visualization of ITS regions.

Associated Tutorial

This workflows is part of the tutorial MGnify v5.0 Amplicon Pipeline, available in the GTN

Features

• Includes a Galaxy Workflow Report
• Uses ...

The MAPseq to Ampvis workflow processes MAPseq OTU tables and associated metadata for analysis in Ampvis2. This workflow involves reformatting MAPseq output datasets to produce structured output files suitable for Ampvis2.

Associated Tutorial

This workflows is part of the tutorial MGnify v5.0 Amplicon Pipeline, available in the GTN

Features

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Quality control subworkflow for paired-end reads.

Associated Tutorial

This workflows is part of the tutorial MGnify v5.0 Amplicon Pipeline, available in the GTN

Features

• Includes a Galaxy Workflow Report

Thanks to...

Workflow Author(s): ...

MGnify's amplicon pipeline v5.0. Including the Quality control for single-end and paired-end reads, rRNA-prediction, and ITS sub-WFs.

Associated Tutorial

This workflows is part of the tutorial MGnify v5.0 Amplicon Pipeline, available in the GTN

Features

• Includes a Galaxy Workflow Report ...

Unsupervised Classification of Bone marrow cells

Associated Tutorial

This workflows is part of the tutorial Unsupervised Analysis of Bone Marrow Cells with Flexynesis, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a ...

This workflow creates taxonomic summary tables out of the amplicon pipeline results.

Associated Tutorial

This workflows is part of the tutorial MGnify v5.0 Amplicon Pipeline, available in the GTN

Features

• Includes a Galaxy Workflow Report
• Uses ...

Quality control subworkflow for single-end reads.

Associated Tutorial

This workflows is part of the tutorial MGnify v5.0 Amplicon Pipeline, available in the GTN

Features

• Includes a Galaxy Workflow Report

Thanks to...

Workflow Author(s): ...

Download data from cBioPortal and prepare it for Flexynesis

Associated Tutorial

This workflows is part of the tutorial Prepare data from CbioPortal for Flexynesis integration, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes ...

This workflow performs step-by-step quantification of electrophoresis gel bands by processing QuPath-generated ROI files in Galaxy, automatically measuring band intensity and producing tabular results for visualization.

Associated Tutorial

This workflows is part of the tutorial Quantification of electrophoresis gel bands using QuPath and Galaxy imaging tools, ...

This workflow is generated from the GTN tutorial Whole transcriptome analysis of Arabidopsis thaliana (https://gxy.io/GTN:T00292).

Associated Tutorial

This workflows is part of the tutorial Whole transcriptome analysis of Arabidopsis thaliana, available in the GTN

Features

• Includes [Galaxy Workflow ...