Workflows

Analyse Bulk RNA-Seq data in preparation for downstream Pathways analysis with MINERVA

Associated Tutorial

This workflows is part of the tutorial Pathway analysis with the MINERVA Platform, available in the GTN

Features

• Includes Galaxy Workflow Tests ...

RAD-Seq to construct genetic maps

Associated Tutorial

This workflows is part of the tutorial RAD-Seq to construct genetic maps, available in the GTN

Thanks to...

Tutorial Author(s): Yvan Le Bras

[![gtn star logo followed by the word ...

Reproduce the tutorial analysis at https://training.galaxyproject.org/training-material/topics/variant-analysis/tutorials/mapping-by-sequencing/tutorial.html

Associated Tutorial

This workflows is part of the tutorial Mapping and molecular identification of phenotype-causing mutations, available in the GTN

Thanks to...

**Tutorial ...

RNA-RNA interactome analysis using ChiRA tool suite

Associated Tutorial

This workflows is part of the tutorial RNA-RNA interactome data analysis, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Tutorial Author(s): ...

Associated Tutorial

This workflows is part of the tutorial Ecoregionalization workflow tutorial, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Uses Galaxy Workflow Comments ...

Downloads data from NCBI assuming the correct data input format. (I.e. it should be two columns, with a header, Run and Group, where Run is an SRR identifier.)

Associated Tutorial

This workflows is part of the tutorial Pathway analysis with the MINERVA Platform, available in the GTN

Features

• Includes [Galaxy Workflow ...

Identification of somatic and germline variants from tumor and normal sample pairs tutorial

Associated Tutorial

This workflows is part of the tutorial Identification of somatic and germline variants from tumor and normal sample pairs, available in the GTN

Features

• Includes [Galaxy Workflow ...

Network analysis with Heinz

Associated Tutorial

This workflows is part of the tutorial Network analysis with Heinz, available in the GTN

Thanks to...

Tutorial Author(s): Chao Zhang

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This workflow completes the second part of the sRNA-seq tutorial from transcript quantification through differential abundance testing.

Associated Tutorial

This workflows is part of the tutorial Differential abundance testing of small RNAs, available in the GTN

Thanks to...

Tutorial Author(s): [Mallory ...

This portion of the workflow produces sets of feature Counts ready for analysis by limma/etc.

Associated Tutorial

This workflows is part of the tutorial Pathway analysis with the MINERVA Platform, available in the GTN

Features

• Includes Galaxy Workflow Tests ...