Segmentation and Reference Point Detection for Laser Capture Microdissection (LMD)

Project Summary

This repository contains the code for a Cellpose-SAM & pyLMD project dedicated to automating cell boundary and reference point detection in microscopic images used for Laser Capture Microdissection (LMD).

The primary function of this repository is to identify the boundaries of target cells and detect ...

YOLO based tail analysis workflow for image segmentation and detection. The workflow is based on https://git.embl.org/grp-cba/tail-analysis/-/blob/main/analysis_workflow.md

Associated Tutorial

This workflows is part of the tutorial Training Custom YOLO Models for Object Detection and Segmentation in Bioimages, available in the GTN

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Based on the Tail analysis workflow at https://git.embl.org/grp-cba/tail-analysis/-/blob/main/analysis_workflow.md

This project is about the automated quantification of wound healing in high-throughput microscopy scratch assays.