Marine Omics identifying biosynthetic gene clusters
1.0

Visit source

Workflow Type: Galaxy

Stable

Secondary metabolite biosynthetic gene cluster (SMBGC) Annotation using Neural Networks Trained on Interpro Signatures

Associated Tutorial

This workflows is part of the tutorial Marine Omics identifying biosynthetic gene clusters, available in the GTN

Workflow Author(s): Marie Jossé

Tutorial Author(s): Marie Josse

Tutorial Contributor(s): Björn Grüning, Saskia Hiltemann

Grants(s): Fair-Ease, EuroScienceGateway

SEEK ID: https://workflowhub.eu/workflows/1663?version=1

DOI: 10.48546/workflowhub.workflow.1663.1

ID	Name	Description	Type
Fasta nucelotide file	Fasta nucelotide file	BGC0001472.fna	File

ID	Name	Description
1	Prodigal Gene Predictor	Create the protein fasta file toolshed.g2.bx.psu.edu/repos/iuc/prodigal/prodigal/2.6.3+galaxy0
2	Sanntis: Build Genbank	Use of Sanntis toolshed.g2.bx.psu.edu/repos/ecology/sanntis_marine/sanntis_marine/0.9.3.5+galaxy1
3	Regex Find And Replace	Remove useless * in the protein fasta file toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regex1/1.0.3
4	InterProScan	Create TSV file for Sanntis toolshed.g2.bx.psu.edu/repos/bgruening/interproscan/interproscan/5.59-91.0+galaxy3
5	Sanntis: identify biosynthetic gene clusters	toolshed.g2.bx.psu.edu/repos/ecology/sanntis_marine/sanntis_marine/0.9.3.5+galaxy1

ID	Name	Description	Type
Protein fasta file	Protein fasta file	n/a	File
Genbank file	Genbank file	n/a	File
Clean protein fasta file	Clean protein fasta file	n/a	File
Tabular file (.tsv)	Tabular file (.tsv)	n/a	File
SMBGC Annotation	SMBGC Annotation	n/a	File