Anthony Bretaudeau

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About Anthony Bretaudeau:

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SEEK ID: https://workflowhub.eu/people/241

Location: France

ORCID: https://orcid.org/0000-0003-0914-2470

Joined: 9th Feb 2022

Expertise: Not specified

Tools: Not specified

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ELIXIR

ELIXIR is an intergovernmental organisation that brings together life science resources from across Europe. These resources include databases, software tools, training materials, cloud storage and supercomputers.

The goal of ELIXIR is to coordinate these resources so that they form a single infrastructure. This infrastructure makes it easier for scientists to find and share data, exchange expertise, and agree on best practices. Ultimately, it will help them gain new insights into how living ...

Teams: ELIXIR Training, FAIR Computational Workflows, EuroScienceGateway, BY-COVID (general), ELIXIR Tools platform, ELIXIR Metabolomics

Web page: https://elixir-europe.org/

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EuroScienceGateway

EuroScienceGateway will leverage a distributed computing network across 13 European countries, accessible via 6 national, user-friendly web portals, facilitating access to compute and storage infrastructures across Europe as well as to data, tools, workflows and services that can be customized to suit researchers’ needs.EuroScienceGateway will deliver a robust, scalable, seamlessly integrated open infrastructure for data-driven research, contributing an innovative and customizable service for ...

Space: ELIXIR

Public web page: https://eurosciencegateway.eu/

Start date: 1st Oct 2022

End date: 31st Aug 2025

Organisms: Not specified

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INRAe

Country: France

City: Not specified

Web page: Not specified

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functional-annotation-protein-sequences/main

Intergalactic Workflow Commission (IWC), EuroScienceGateway

This workflow uses eggNOG mapper and InterProScan for functional annotation of protein sequences.

Type: Galaxy

Creators: Romane Libouban, Anthony Bretaudeau

Submitter: WorkflowHub Bot

DOI: 10.48546/workflowhub.workflow.1262.1

Created: 31st Jan 2025 at 03:01, Last updated: 18th Aug 2025 at 16:39

annotation_helixer

Galaxy Training Network, EuroScienceGateway

Stable

This workflow allows you to annotate a genome with Helixer and evaluate the quality of the annotation using BUSCO and Genome Annotation statistics. GFFRead is also used to predict protein sequences derived from this annotation, and BUSCO and OMArk are used to assess proteome quality.