Apollo Load Test
1.0

Visit source Download RO-Crate Run on Galaxy
Workflow Type: Galaxy
Stable

Refining Genome Annotations with Apollo

Associated Tutorial

This workflows is part of the tutorial Refining Genome Annotations with Apollo (prokaryotes), available in the GTN

Thanks to...

Tutorial Author(s): Anthony Bretaudeau, Helena Rasche, Nathan Dunn, Mateo Boudet

Tutorial Contributor(s): Anthony Bretaudeau, Björn Grüning, Saskia Hiltemann, Helena Rasche, Bérénice Batut, Stéphanie Robin, Simon Bray

Grants(s): Gallantries: Bridging Training Communities in Life Science, Environment and Health, EuroScienceGateway

gtn star logo followed by the word workflows

SEEK ID: https://workflowhub.eu/workflows/1554?version=1

DOI: 10.48546/workflowhub.workflow.1554.1

Inputs

ID Name Description Type
Amel_4.5_scaffolds.fa.gz #Amel_4.5_scaffolds.fa.gz n/a
  • File
amel_OGSv3.2.gff3.gz #amel_OGSv3.2.gff3.gz n/a
  • File
forager.bw #forager.bw n/a
  • File
forager_Amel4.5_accepted_hits.bam #forager_Amel4.5_accepted_hits.bam n/a
  • File

Steps

ID Name Description
4 Register Account toolshed.g2.bx.psu.edu/repos/gga/apollo_create_account/create_account/3.1
5 List Organisms toolshed.g2.bx.psu.edu/repos/gga/apollo_list_organism/list_organism/3.1
6 JBrowse toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.16.11+galaxy1
7 Create or Update Organism toolshed.g2.bx.psu.edu/repos/gga/apollo_create_or_update/create_or_update/4.2.5
8 Annotate toolshed.g2.bx.psu.edu/repos/gga/apollo_iframe/iframe/4.2.5

Outputs

ID Name Description Type
_anonymous_output_5 #main/_anonymous_output_5 n/a
  • File
_anonymous_output_6 #main/_anonymous_output_6 n/a
  • File
_anonymous_output_7 #main/_anonymous_output_7 n/a
  • File
_anonymous_output_8 #main/_anonymous_output_8 n/a
  • File
_anonymous_output_9 #main/_anonymous_output_9 n/a
  • File

Version History

1.0 (earliest) Created 2nd Jun 2025 at 10:58 by GTN Bot

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Citation
Bretaudeau, A., Rasche, H., Dunn, N., & Boudet, M. (2025). Apollo Load Test. WorkflowHub. https://doi.org/10.48546/WORKFLOWHUB.WORKFLOW.1554.1
License
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Activity

Views: 1447   Downloads: 207   Runs: 0

Created: 2nd Jun 2025 at 10:58

Last updated: 28th Jul 2025 at 11:06

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