MultiQC72 SAMtools66 FastQC64 fastp55 BUSCO37 BWA36 Minimap234 Bowtie 233 anndata29 Cutadapt27 BEDTools26 BCFtools24 SCANPY24 ggplot222 Bandage21 kraken221 BLAST20 QUAST19 taxonomy_krona_chart18 gfastats17 MACS16 Merqury16 Trimmomatic16 Bwa-mem215 JBrowse15 STAR15 FASTX-Toolkit14 seqtk14 SRA Software Toolkit14 Trim Galore14 FreeBayes13 gffread13 NanoPlot13 scikit-learn13 BamTools12 Flye12 GenomeScope 2.012 StringTie12 mothur11 scikit-image11 DeepTools10 DESeq210 Galaxy Image Analysis10 HISAT210 lofreq10 Open Babel10 MaxQuant9 msConvert9 Stacks9 UniProt9 Biopython8 bx-python8 QualiMap8 R8 RSeQC8 shovill8 snpEff8 Unicycler8 Bracken7 Galaxy7 MaBoSS7 MAFFT7 PhysiCell7 purge_dups7 Racon7 antiSMASH6 Falco6 FeatureCounts6 GEMINI6 Gromacs6 Konstanz Information Miner (KNIME)6 KrakenTools6 Medaka6 MetaPhlAn6 MuSiC Deconvolution6 RDKit6 RepeatMasker6 Seurat6 SPAdes6 TransDecoder6 vardict6 Vcflib6 Bakta5 Compleasm5 DropletUtils5 gffcompare5 GOseq5 humann5 InterProScan (EBI)5 iqtree5 MAPseq5 MEGAHIT5 Picard5 Recentrifuge5 Salmon5 Scipion5 seqkit5 ToolDistillator5 UMI-tools5 Unipept5 annotatemyids4 biomformat4 CellProfiler4 CheckM4 Clustal 2 (Clustal W, Clustal X)4 COMBAT-TB Workbench4 compute_sequence_length4 Cufflinks4 Diamond4 eggNOG-mapper v24 funannotate4 Galactic Circos4 HiCExplorer4 Infernal4 Meryl4 MSstats4 Newick Utilities4 NGSUtils4 OMArk4 PretextView4 PRINSEQ4 Prokka4 pyGenomeTracks4 SemiBin4 Smudgeplots4 snippy4 Variant Effect Predictor (VEP)4 Workflow4Metabolomics4 xcms4 ABRicate3 AmberTools3 bed to protein map3 Binette3 Cardinal3 ChiRA3 cisTEM3 Clair33 clusterProfiler3 CoverM3 customProDB3 FastTree3 Filtlong3 Helixer3 MAKER3 MaxBin3 MetaBAT 23 MetaNovo3 metaspades3 MotionCor23 MSstatsTMT3 Nextflow3 picard_samtofastq3 SeqCode3 Snakemake3 SnpSift3 staramr3 tb-profiler3 VarScan3 YaHS3 AdapterRemoval2 ampvis2 AnnotSV2 AutoDock2 AutoDock Vina2 BBMap2 Bio3D2 BioContainers2 BRAKER12 BRAKER32 cBioPortal2 CheckM22 ChEMBL2 chemfp2 ChemicalToolbox2 cmsearch-deoverlap2 CNVkit2 cshl_fastx_reverse_complement2 DeepVariant2 edgeR2 EGA2 epiScanpy2 export2graphlan2 FEELnc2 GATK2 GOEnrichment2 GraPhlAn2 Hostile2 htseqcount2 HUMAnN22 The Immune Epitope Database (IEDB)2 Integron Finder2 ISEScan2 kallisto2 limma2 Matchms2 MDAnalysis2 MEME2 metaQuantome2 MFAssignR2 miniasm2 nanopolish2 NCBI Datasets2 NCBI Resources2 OBITools2 OptiType2 P2Rank2 pathview2 The Protein Data Bank (PDB)2 pilon2 PlasmidFinder2 PredPrIn2 Prodigal2 Proteinortho2 QIIME2 RepeatModeler2 sceasy2 Scipion-chem2 Seq2HLA2 Sequali2 SnapATAC2 SortMeRNA2 SuCOS2 tbl2gff32 tophat22 VADR2 vcfanno2 vcfutils2 VSEARCH2 XMIPP2 AGAT1 Alevin1 iVar1 ANTsX1 Apollo1 AUGUSTUS1 AutoSite1 BBTools1 Bioconductor1 BlobToolKit1 blockbuster1 Bowtie1 CARNIVAL1 CAT and BAT1 CellChat1 ChIPpeakAnno1 Circos1 Clustal 1.8 (Clustal W, Clustal X)1 Combine Metaphlan and HUMAnN1 CONCOCT1 cuffdiff1 dada21 dastool1 decoupleR1 Delly21 diaPASEF1 dRep1 dupRadar1 eggNOG1 EGSEA1 EMBOSS1 European Nucleotide Archive (ENA)1 ete1 ewastools1 fastplong1 FastQ Screen1 FGENESH1 fgsea1 FLASH1 FlashLFQ1 Foldseek1 Fpocket1 FREEC1 GADES1 GAEVAL1 gblocks1 GBMatch - GBMPredictor1 GECKO1 GetOrganelle1 ggtree1 g:Profiler1 GSEA1 GTDB1 GTDB-Tk1 hAMRonization1 Heinz1 HiFiAdapterFilt1 Hifiasm1 HTSeq1 HTSlib1 ImageJ21 IsoformSwitchAnalyzeR1 iVar1 IWTomics1 JBrowse 21 KofamKOALA1 kofamscan1 kraken-biom1 Krona1 LASTZ1 Liftoff1 lotus21 MAGeCK1 MALDIquant1 Mash1 metabuli1 MetaCoAG1 MethylDackel1 miniprot1 miRDeep21 MitoHiFi1 MITOS1 MMseqs21 MOB-suite1 MolMeDB1 Metagenomic operational taxonomic units (mOTUs)1 MSMetaEnhancer1 multiGSEA1 MUMmer1 mzToSQLite1 NCBI fcs1 NextPolish1 nf-core-rnaseq1 ngsReports1 OmicFlow1 pangolin1 pbmm21 Peakachu1 PEAR1 PfamScan1 phantompeakqualtools1 phyloseq1 PhysiBoSS1 PlasFlow1 PLINK1 Polypolish1 progeny1 protexcluder1 PubMed1 pyfastaq1 PyTorch1 qcxms1 QuickTree1 RaceID1 RAMClustR1 RapidNJ1 RAxML1 RCAS1 recetox-msfinder1 RED1 RepeatModeler1 RIAssigner1 rnaQUAST1 RSEM1 SALSA1 scater1 SeqSero21 sinto1 SISTR1 SNAP1 Sniffles1 snipit1 strobealign1 Subread1 tabix1 Targetfinder.org1 TaxonKit1 TRANSIT1 trimAl1 Trinity1 Trinotate1 TSSr1 UCSC Genome Browser Utilities1 VAMB1 VAPOR1 varlociraptor1 varVAMP1 VelvetOptimiser1 WGCNA1 WoLF PSORT1 xtb1 More...

Galaxy713 Nextflow167 Common Workflow Language111 COMPSs67 Snakemake60 Python59 Jupyter35 Docker21 Scipion17 Shell Script16 KNIME14 Playbook Workflow Builder Workflow9 R markdown9 Autosubmit8 Workflow Description Language8 Bpipe5 Argo Workflow2 BioCompute Object1 DVC1 Janis1 Perl1 Pi1 Plug-in1 Quarto Markdown1 Rbbt1 Uniform Interface to Computing Resources1 More...

Galaxy381 GTN366 Bioinformatics92 Genomics64 Transcriptomics53 Assembly48 PyCOMPSs47 covid-1946 Metagenomics46 Proteomics43 Ecology41 Supercomputer37 Workflows36 Biodiversity33 data_persistence32 Nextflow29 microbiome26 Python26 Annotation24 genome-annotation23 CWL22 imaging22 Marenostrum IV22 non_data_persistence22 rna22 rna-seq19 Alignment18 single-cell18 SNPs18 COMPSs17 Machine Learning17 dislib16 Statistics16 variant_calling16 variant-analysis16 workflow16 DT-GEO15 ERGA15 INDELs15 cancer14 Digital Twin14 Geophysics14 Name:neoantigen14 name:single-cell14 nanopore14 variant calling14 epigenetics13 GATK413 RNASEQ13 Tutorial13 Example12 illumina12 image processing12 Marenostrum V12 Name:microgalaxy12 Cheminformatics11 Climate11 jupyter11 Metabolomics11 name:training11 ONT11 Virology11 Amplicon10 Computational-chemistry10 FASTQ10 Introduction10 Name:clinicalmp10 QC10 Virus10 HiFi9 Large-genome-assembly9 Lg-wf9 Ml9 SARS-CoV-29 Snakemake9 vgp9 WGS9 Earth-system8 FAIR workflows8 Galaxy-interface8 Laptop8 Name:singlecell8 Name:transcriptomics8 Ocean8 scRNAseq8 softwareRequirements8 astronomy7 bioimaging7 ChIP-seq7 DNA7 Java7 scalable7 TSI-annotation7 variant-calling7 Classification6 COMPSs Use Cases6 evolution6 Genome assembly6 genome_assembly6 Hi-C6 Knime6 mass-spectrometry6 Mgnify_amplicon6 molecular dynamics6 name:Collection6 NGS6 PBS6 Retrosynthesis6 Sequence-analysis6 antimicrobial resistance5 bacterial-genomics5 bbmap5 bpipe5 BUSCO5 BY-COVID5 copernicus5 covid19.galaxyproject.org5 genome5 groovy5 mapping5 Name:iwc5 Name:pathogfair5 NCI5 pacbio5 pangeo5 pediatric5 phylogenetics5 rare diseases5 remote_dataset5 SAMTools5 scipion5 scRNA-seq5 Segmentation5 shotgun5 Visualisation5 ABRomics4 AMR4 ARTIC4 BGE4 binning4 CellProfiler4 Deep learning4 display4 EOSC4Cancer4 FAIR4 Flexynesis4 Gadi4 generic4 Germline4 gpu4 helicase4 HPC4 long-read-sequencing4 Machine_learning4 Metabarcoding4 metatranscriptomics4 Multi-omics4 name:ASSEMBLY+QC4 Name:deconv-eval4 name:ONT4 Name:scrna-seq4 OMERO4 openms4 pathogen4 RDM4 rna virus4 scATAC-seq4 spa4 structural variants4 taxonomic-classification4 taxonomic-profiling4 vadr4 vardict4 vvv2_display4 10X3 10xgenomics3 16S3 AMR-detection3 Assembly+QC3 ATAC-seq3 Bioimage3 brs3 BWA3 BWA-mem3 Conversion3 cryoem3 Databases3 DataQC3 Default-SDR3 denovo-assembly3 eDNA3 Epigenomics3 FastQC3 GC-MS3 Gene Prioritization3 genome-assembly3 hCNV3 HiC3 hifiasm3 hla3 identification3 kallisto3 kraken3 long-reads3 manta3 Merqury3 MetaDEGalaxy3 MultiQC3 Name:by-covid3 name:ERGA3 name:ILLUMINA3 Name:trajectory_analysis3 NCI-Gadi3 OME-Zarr3 paired-end3 Pathway Analysis3 pathway prediction3 Profiling3 protein3 quality3 R3 S33 SANBI3 Somatic3 STAR3 synthetic-biology3 textcleaning3 training3 transcriptome3 whole genome sequencing3 10x-genomics2 18S2 4culture2 adna2 Alternative splicing2 alternative-splicing2 annotsv2 antibiotic-resistance2 antimicrobial-resistance-genes2 BAM2 bash2 bgc2 BioID2 biosynthetic-gene-clusters2 blast2 Braker32 BROAD2 C++2 cage2 cage-seq2 cageseq-data2 Cellranger2 cfDNA2 ChIP2 CNVkit2 CODEX22 collections2 Consensus2 Contributing2 Copy Number Variation2 coronavirus2 cosifer2 CTE-Power92 culturedata2 DE_NOVO2 demultiplexing2 dengue2 denovo2 differential-expression2 Digitalhumanities2 dna barcoding2 dna-methylation2 DNA-seq2 Docker2 Drug design2 earth observation2 Ecoregionalization2 Electron microscopy2 ena2 ExomeDepth2 exploration2 Exposomics2 expression2 fasta2 Flashlite2 gene set enrichment analysis2 Genomeannotation2 genomics-visualization2 Glacios2 GROMACS2 GUCFG2galaxy2 GWAS2 human2 HySEA2 Iedb2 image-analysis2 image-processing2 imageanaylsis2 ITS2 Jbrowse2 k-mer2 linkage_map2 Marineomics2 MARS-seq2 Matrix Multiplication2 MERS2 Meryl2 metabolic engineering2 metagenome2 microbial2 Microgalaxy2 MIRACUM2 mirna prediction2 mpxv2 multi-specimen-input2 name:public-data2 Name:seurat2 nanopore-sequencing2 natural history collections2 NCI Gadi2 NSP132 openrefine2 oxford-nanopore2 pangenome2 pathway design2 peak-calling2 personalized medicine2 phasing2 phylogenomics2 phylogeny2 Pipeline2 Plant2 plasmids2 protein-families2 Protein-Protein interaction prediction2 protein-structure2 proteogenomics2 PyTorch2 QCxMS2 quality control2 quantification2 Quast2 RDF2 referencegenome2 Report2 Reviewed2 scientific publication text mining2 Semantic Network Analysis2 sequence annotation2 single-cell-rna-seq2 singularity2 smart-seq 22 snv2 spatial2 star-solo2 structural-variants2 Supernova2 SVD2 synteny2 Synthetic Biology2 synthetic data2 tabulardata2 TalosArctica2 taxonomy-assignment2 TitanKrios2 Tophat22 TransBioNet2 trinity2 TSI2 Tsunami2 tuberculosis2 validated-2022-06-292 variation2 VARSCAN22 VCF2 Virtual Drug Screening2 visualization2 Voronoi2 WDL2 wes2 west nile2 yolo2 zika2 10.3390/microorganisms100202921 ABR1 abricate1 adaptor1 air-quality1 airr1 alevin1 alphafold21 amp1 amplicon-sequencing1 ampliconarchitect1 ampliconsuite1 ancient dna1 ancient-dna1 ancient-dna-analysis1 ancientdna1 annotation pipeline1 antimicrobial-peptides1 arg1 Argo1 Asaim1 atac1 ATACseq1 Augustus1 AutoDock1 automated workflows1 b-cell1 BackTrackBB1 bacteria1 bacterial1 bacterial-genome-analysis1 bacterial-genomes1 bamtofastq1 bases2fastq1 BBduk1 bcl2fastq1 Beacon1 Behavioral data1 benchamrking1 benchmark1 benchmarking1 Big-data1 BioBB1 bioformats1 bioformats2raw1 Bioinformatics tool1 Biomedical Ontologies1 BioScanEurope1 BioStudies1 bisulfite-sequencing1 Bootstrapping1 bowtie21 BQSR1 braken1 brokering1 bustools1 bwa-mem21 carveme1 CATH1 causal inference1 cBioPortal1 cell-lines1 chimeric-alignment1 Chinese-language1 Chowell_train_test1 chromatin-accessibiity1 chromatin-immunoprecipitation1 chromosome-conformation-capture1 circle-seq1 circular1 citizen science1 clinical1 clip1 clip-seq1 Clustering1 cmip61 common data model1 Community_metrics1 community-detection1 comparative effectiveness1 comparative-genomics1 Comparison1 Compomics1 Connectome-based predictive modeling1 conservation genomics1 container1 contamination1 contigs1 coprolite1 corruption1 cosmic1 counts1 covid191 CPM1 cramtofastq1 crispr1 crispr-analysis1 crispr-cas1 cross-validation1 cryosparc1 ctat1 Cut&run1 cutandrun1 cutandrun-seq1 cutandtag1 cutandtag-seq1 CUTnRUN1 CWR1 cytometry1 Darwin core1 DaSch1 data annotation1 data fusion1 data integration1 Data package1 data reproducibility1 data retrieval and transformation1 data transformation1 data wrangling1 data-cleaning1 data-independent-proteomics1 data-recovery1 database1 database-builder1 DataOne1 dda1 ddbj1 DE1 de novo1 de-identification1 decoding1 decontamination1 Deep_learning1 deep-learning1 deep-variant1 Deeplearning1 demo1 deseq21 Dh1 dia1 dia-proteomics1 diagnostics1 DIAMOND1 Diff1 differential expression1 differential_expression1 differential-abundance1 directed acyclic graph1 disease outcome prediction1 DL1 Domain-Domain interaction1 dot-plot1 download1 draft1 dRNAseq1 drug discovery1 drug-response1 drug-response-prediction1 drugs1 dualrna-seq1 durg response simulation1 earth-observation1 Earthquake Detection1 eccdna1 ecdna1 Ecological metadata language1 eFlows4HPC1 EGA-archive1 Electrophoresis_gel1 elementbiosciences1 em-seq1 emergen_validated1 EML1 eml-annotation1 Environmental monitoring1 eosc-nordic1 epidemiology1 epigenome1 epitope1 epitope-prediction1 eukaryotes1 eukaryotic genome1 Evaluation1 evolutionary-tree1 EVORA1 exome1 Expospomics1 extrachromosomal-circular-dna1 EZyRB1 facs-sorting1 fair-principles1 fastp1 fastq-corrupted1 fastq-format1 fcs1 featurecounts1 file conversion1 filter1 filtering1 fish1 fMRI1 Fnn1 Formulaassignment1 Fragmentomics1 function1 Functional Analysis1 Fungi1 fusion1 fusion-genes1 Galaxy-E1 GATK1 GATK31 GEM1 genbank1 gene expression analysis1 gene expression correlation1 gene expression data wrangling1 Gene ontology term sets similarity1 gene prediction1 gene-expression1 gene-fusion1 GeneMark-ET1 generalization1 genetic design1 genome erosion1 genomic ancestry1 genotype1 geo1 geo database mining1 geology1 Geophyics1 Geosciences1 gff31 ggbio1 GLM1 global assemblies1 gnomad1 gnps1 google1 graph1 Gravitational Waves1 GRIDS1 GRIDSS1 GRN1 gro-seq1 gsea1 GTF1 GUI1 Habitat fragmentation1 HaplotyeCaller1 Helixer1 hicar1 high-throughput1 high-throughput_sequencing_analysis1 historical dna1 hla-typing1 hmdb1 horizontal-gene-transfer1 host-pathogen1 host-pathogen PPIs1 HTSeq1 Human genomics1 Humanities1 humann21 Hybrid Workflow1 hybrid-assembly1 hyperparameter-tuning1 IA1 IDR1 image file format1 image-segmentation1 imageJ1 Imagerecognition1 immcantation1 immunology1 immunopeptidomics1 immunorepertoire1 imputation1 index1 international comparison1 Introductions1 iontorrent1 isoform switching1 isoseq1 isoseq-31 Iwtomics1 Juicer1 kmeans1 kmer1 kmer-counting1 kmer-frequency-count1 kraken21 Kratos Multiphysics1 krona1 Labbook1 label-free-quantification1 Land cover classification1 landsat1 Landscape ecology1 last1 lava1 lfq1 LiftOver1 limma1 linked-reads1 Llr6_model1 Logistic_regression_model1 long-read1 Loris1 Lotus21 low-pass-sequencing1 Ludwig1 Luigi & Rufus workflow1 machine-learning1 macs21 MAG1 Magic1 map1 Marine omics1 mass-spec1 massbank1 MaxQuant1 memote1 metagenomes1 metagenomic-profiling1 Metaplasmidome1 metataxonomics1 methyl-seq1 MGE1 mhc1 mhc-binding-prediction1 microarray1 microscopy1 minimal-example1 miniTurboID1 Mito-flash1 Mitochondrion_tracking1 mlxv1 mnase-seq1 Mnist1 Mobilome1 model1 Modeling1 modern dna1 ModGP1 molecular-pixelation1 molecularcartography1 Moleculardynamics1 mpvx1 MRI1 ms11 ms21 Multivariate1 Mutect21 n501 name:amplicon1 Name:bacsnp1 Name:baculoviridae1 Name:baculovirus1 Name:band_intensity1 Name:bioimaging1 Name:circos1 Name:data-management1 Name:deconvolution1 Name:gtn1 Name:naldv1 Name:nanopore1 name:PROFILING1 Name:qupath1 Name:sequenceanalysis1 Name:single_cell1 Name:viz1 nanostring1 nanostringnorm1 nascent1 natural-products1 ncbi sra1 ndvi1 networks1 NGFF1 Noiseestimation1 non-coding1 non-model1 Non-parametric1 nonspliced1 Nord31 NS31 nucleosome1 nucleosome-maps1 nucleosome-positioning1 observation1 ocr1 OME-TIFF1 openebench1 optitype1 pairwise-alignment1 panel1 parallel1 Parsl1 pathogen-genomics1 pathogenicity score1 Pathology1 Pathway co-occurrence1 pbat1 peptides1 Perl1 Permeability1 personalized-medicine1 Pfam1 phylogenetic-placement1 pixelator1 pixelgen-technologies1 plasmid1 pod51 Polarized images1 polygenic risk score1 polygenic score1 population genomics1 population-genetics1 pox1 pre-processing1 prediction1 Presence_absence1 pro-seq1 prokaryotes1 prokka1 Proline1 Protein domains1 protein evidence1 protein interactin data triplification1 protein interactions database integration1 protein-databases1 protein-fold-prediction1 protein-folding1 Protein-Protein Interaction1 protein-sequences1 proteins1 proteins network augmentation1 Pseudobulk1 public cancer datasets exploration1 Public colorectal cancer dataset1 publication1 Published1 Pubmed1 Pubtator1 puretarget1 purge_dups1 pypgatk1 qiime21 qPCR1 QTL mapping1 quantseq1 R-package1 radio interferometry1 randomization-tests1 rare-disease1 rdkit1 readmapping1 reads_selection1 reads_simulation1 reads-interleaving1 Recalibration1 Reconstruction1 recovery-tool1 Reduced Order Modeling1 Regression1 Regulatory Mendelian Mutation score1 RELIANCE1 ReMM1 repeat1 repseq1 rice1 rna-rbp-interactions1 ro-crate1 robustness-assessment1 Roi1 rrbs1 rrna1 RSeQC1 salmon1 sambamba1 satellite-imagery1 screening1 SDM1 secondary-metabolites1 Seismic Detection1 Semantic Comparison1 Semantic Interpretation1 semantic web standards1 Sempi31 Sentinel-21 sentinel-2 data1 sequence search1 sequence-classification1 shiny1 short-reads1 SIM1 Single cell clustering1 single particle analysis1 single-cell-omics1 single-end1 SKA1 slamseq1 small-rna1 Smfish1 smoove1 smrna-seq1 Solid Earth1 SPARK1 spatial transcriptomics1 Species abundance1 spectra1 spectral-unmixing1 splicing1 sra1 standardisation1 strandedness1 StringTie1 submission1 survivor1 SV1 synapse1 Tabpfn1 TAD1 tama1 target-panels1 targeted1 taxonomies1 taxonomy1 tcga1 TELLSeq1 telomere1 Text1 Text_mining1 Text-mining1 tiddit1 tidyverse1 tmt1 Tomography1 topologically associating domains1 Toxicology1 trajectories1 Trans-Proteomic1 transcription1 Transcription Start Sites1 transcriptional-dynamics1 tree1 trend-analysis1 trends1 trimming1 tss1 tumour1 ultra1 umi1 umis1 Unicycler1 unique-molecular-identifier1 unpaired-reads1 urgent computing1 vaccines1 validaiton o protein interaction predictions1 variant1 variant pathogenicity prediction1 variant-annotation1 Vegetation1 Vegetation index1 VGP_curated1 viral1 viral-integration1 viral-metagenomics1 virus-genomes1 viruses1 virusintegrationfinder1 well-formed1 whole-exome-sequencing1 whole-genome-alignment1 whole-genome-sequencing1 wigits1 wnt signaling1 worflow1 Workflow RO-Crate1 WorkflowHub1 wts1 XNAT1 More...

GTN Bot363 WorkflowHub Bot180 Genís Bayarri70 Raül Sirvent33 Anna Syme25 Diego De Panis18 Bert Droesbeke17 Laura Rodriguez-Navas14 Sarah Williams14 Johannes Kemper14 Daniel Marchan13 Daniel Clarke13 Yvan Le Bras12 Bart Nijsse12 ramiz khaled11 Ambarish Kumar10 Anne Fouilloux9 Tracy Chew9 Cristóbal Gallardo9 Patrick Austin9 Georgina Samaha8 Jean-Marie Burel8 Miguel Vazquez8 Cristian Tatu8 Fernando Vázquez-Novoa8 Paul De Geest8 Douglas Lowe7 Yasmmin Martins7 W. Daniel Kissling7 Johan Gustafsson6 Fabrice Touzain6 Pablo Goitia6 Yolanda Benítez Quesada6 Nicolas Blavet6 Martin Beracochea5 Jasper Koehorst5 Sergi Sayols5 Helena Rasche5 Oliver Woolland5 Pablo Orviz5 Tom Brown5 Matthieu Muffato5 Aldar Cabrelles5 Melchior du Lac4 Willem de Koning4 Peter van Heusden4 johan Rollin4 Dennis Dollée4 Konstantinos Kyritsis4 Bryan Raubenolt4 Nicolò Giacomini4 Riccardo Massei4 Pavlo Lutsik4 Stian Soiland-Reyes3 Irene Sánchez3 Juma Bayjan3 Valentine Murigneux3 Mike Thang3 Wolfgang Maier3 Anton Nekrutenko3 Jeanette Reinshagen3 Varsha Kale3 Pablo Riesgo Ferreiro3 Damon-Lee Pointon3 Kateřina Storchmannová3 Oliver White3 Timon Schlegel3 Sora Yonezawa3 Marie Jossé3 Hervé Ménager2 Luca Pireddu2 Robin Long2 Beatriz Serrano-Solano2 Pavankumar Videm2 Simone Leo2 Ross Thorne2 Sarah Beecroft2 Cyril Noel2 Volodymyr Savchenko2 Johannes Köster2 thodk2 Elida Schneltzer2 Pasi Korhonen2 Miguel Roncoroni2 Kary Ocaña2 Alejandra Escobar2 Cristiane Taniguti2 Peter Menzel2 Adam Tofilski2 Simon Rolph2 David James Sherman2 Stevie Pederson2 Tina Tian2 Daan Hazelaar2 Andrea Furlani2 Vasiliki Panagi2 Khaled Jum'ah2 Jorge Ejarque2 Louise Cordrie2 Yi Sun2 Rutger Vos2 Magdalena Antczak2 Nathaniel Matteson2 Aishwarya Iyer2 Ashish Bhawel2 Xiaolong Luo2 Kristina Gomoryova2 dan rick2 Diana Chiang Jurado2 Michael Lynch2 Pauline Seguineau2 Panna Lukacs2 Oleg Kalashev2 SaibotMagd magd2 Hugo Lefeuvre2 Jiamian He2 Dan Parsons2 Andrei Variu2 Daniel Del Hoyo2 Yichun Feng2 Cenny Taslim2 Martijn Melissen2 francois moreews1 Camille Juigné1 Laura del Cano1 Ivan Topolsky1 ignacio eguinoa1 Andrea Giachetti1 Michael R. Crusoe1 Matteo Chiara1 Carlos Oscar Sorzano Sanchez1 Paul Brack1 phytopat gembloux1 johan Rollin1 Marco De La Pierre1 Julian Uszkoreit1 Qinqin Long1 Dennis Hendriksen1 Daphne Wijnbergen1 Patrick Durand1 Richard Lupat1 Javier Moldon1 Bianca Pasat1 Rob Edwards1 Valentin Tilloy1 Michael Roach1 Leah Kemp1 Ryan Patterson-Cross1 Alexander Botzki1 panou@fleming.gr Panou1 Haris Zafeiropoulos1 Kaur Alasoo1 Hrishikesh Dhondge1 Marvin Martens1 Marlene Rezk1 Tong LI1 Naga Kasinadhuni1 Casper de Visser1 Radek Veverka1 Tim Booth1 Samuel Lambert1 Ekaterina Sakharova1 Saskia Hiltemann1 Bugra Oezdemir1 Max Schubach1 Luc Cornet1 Silas Kieser1 Felicita Gernhardt1 Nico Trummer1 Ang Guo1 Diego Garrido-Martín1 Roderic Guigó1 Bruno P. Kinoshita1 Luca Cozzuto1 Xiaokang Zhang1 Zavolan Lab1 Mahnoor Zulfiqar1 Jeffrey Detras1 Thomas Gruber1 Marjan Meurisse1 Sanjay Nagi1 Ben Price1 Jorrit Mesman1 Elisabetta Spinazzola1 Rosa M Badia1 Anand Maurya1 Agata Kilar1 Vincent Hervé1 Markus Konkol1 Jessica Gomez-Garrido1 Akshay Akshay1 Phuong Doan1 Davide Gurnari1 David Yuan1 Justin Sonneck1 Daniele Lezzi1 Bram Danneels1 Zafran Hussain Shah1 Denys Savchenko1 Michael Hall1 Rafael Terra1 Rebecca Bruni1 Ziad Al-Bkhetan1 Dominik Lux1 Archit Dabral1 Andrii Neronov1 Michael Lloyd1 Arnau Soler Costa1 Thomas Roetzer-Pejrimovsky1 Helge Hecht1 Wudmir Rojas1 David Potesil1 Carlos Classen1 Verena Kutschera1 Usman Rashid1 Eli Chadwick1 Zsolt Balázs1 Jinhu Wang1 Pavel Akhtyamov1 Francesco Messina1 Sebastian Röner1 Ann-Kathrin Dörr1 仕卓 张1 Mahesh Binzer-Panchal1 Jen-Hung Wang1 Fabian Hausmann1 Qiang Ye1 Liang Cheng1 Benjamin Istace1 Alberto Aguado1 YIN ZHANG1 Kisaru Liyanage1 Kieran Atkins1 Tobias Bachmann1 Tristan Pelser1 Albert Puiggros1 Daniel Bauer1 Jens Krumsieck1 Zhi Song1 Viola Fanfani1 Lorenz Gruber1 Armin Dadras1 zhantian xu1 Natasha Clarke1 Jonas Kasmanas1 Zhen Zhang1 Tyler Lovelace1 Jeanne Chèneby1 Robin Navest1 Avani Bhojwani1 Yichao Hua1 Azusa Kubota1 Bundit Boonyarit1 Jorge Mas Gomez1 Ma Wenlong1 Crist John Pastor1 Alem Gusinac1 Ignacio Garach Vélez1 Thanh-Hai Le1 Huihai Wu1 Qibo Xu1 Thomas Barba1 Diane Duroux1 Myrthe van Baardwijk1 Hana Plešingerová1 Joy Chen1 Nikolay Oskolkov1 Arkadiusz Sitek1 Zhixing Feng1 Takudzwa Musarurwa1 Abao Xing1 Caner Bağcı1 Won-Min Song1 qiankunzizairen Liu1 Daniela Schneider1 Henry Schober1 Evangelos Karatzas1 Isabella Brown1 Pierre Poulain1 Łukasz Opioła1 More...

Galaxy Training Network377 Intergalactic Workflow Commission (IWC)94 nf-core86 BioBB Building Blocks80 EuroScienceGateway48 Australian BioCommons44 Workflows and Distributed Computing42 Galaxy Australia30 ERGA Assembly23 usegalaxy-eu22 GalaxyProject SARS-CoV-221 QCIF Bioinformatics21 UNLOCK17 Sydney Informatics Hub17 Scipion CNB15 WP7 - Earthquakes14 COMPSs Tutorials14 NIH CFDE Playbook Workflow Partnership13 PNDB12 MGnify11 eFlows4HPC general11 Galaxy Climate9 EOSC4Cancer9 OME8 BSC-CES8 PerMedCoE8 IBISBA Workflows7 yPublish - Bioinfo tools7 Biodiversity Genomics Europe (general)7 Laserfarm applications to European demonstration sites7 CWL workflow SARS-CoV-26 Integrated and Urban Plant Pathology Laboratory6 EJPRD WP13 case-studies workflows6 ANSES-Ploufragan6 Tree of Life Genome Analysis6 EGA6 Bioinformatics Unit IIS-FJD6 Bioinformatics Core CEITEC6 IMBforge5 UX trial team5 iPC: individualizedPaediatricCure5 Specimen Data Refinery5 Cluster Emergent del Cervell Humà5 Seq4AMR5 HoloFood at MGnify5 WP5 - Volcanoes5 DNA Foundry5 NanoGalaxy4 Euro-BioImaging4 SANBI Pathogen Bioinformatics4 Biodata Analysis Group4 WP8 - Anthropogenic geophysical extremes4 Tree of Life Genome Assembly4 Generalized Open-Source Workflows for Atomistic Molecular Dynamics Simulations of Viral Helicases4 Proteomics CEITEC4 UFZ - Image Data Management and Processing Workflows4 galaxy-SynBioCAD4 SARS-CoV-2 Data Hubs3 SeBiMER3 Snakemake-Workflows3 ODA3 CO2MICS Lab3 EU-Openscreen3 TRON gGmbH3 TRE-FX3 ERGA Annotation3 Bioinformatics Laboratory for Genomics and Biodiversity (LBGB)3 BY-COVID (general)3 Chemical Data Lab3 NHM Clark group3 FAIR-EASE3 bonohulab3 BioImage Informatics and Analysis Workflows3 iBOL Europe Museum Skimming3 nf-core viralrecon2 V-Pipe2 EOSC-Life - Demonstrator 7: Rare Diseases2 Pawsey Supercomputing Research Centre2 Applied Computational Biology at IEG/HMGU2 INFRAFRONTIER workflows2 TransBioNet2 CRC Cohort2 Workflows Australia2 Medizinisches Proteom-Center, Medical Bioinformatics2 usegalaxy.be workflows2 Air Quality Prediction2 NBIS2 Read2Map2 ParslRNA-Seq: an efficient and scalable RNAseq analysis workflow for studies of differentiated gene expression2 KircherLab2 Apis-wings2 BioDT Use Case 4.1.1.2 Ecosystem services2 MISTIC2 Black Ochre Data Labs2 Workflows for geographic science2 Katdetectr2 Pillar III: Urgent computing for natural hazards2 EMBL-Bioimage Analysis Support2 CholGen2 Peter Menzel's Team2 Genome Data Compression Team2 RECETOX SpecDatRI2 WGGC2 Culhane Lab2 ErasmusMC Clinical Bioinformatics2 Astroparticle Lab2 CDPP2 FAIR_thesis: Marine acoustic data2 Biomedical_LLM2 Cell Free2 Kendall-Theisen lab pipelines2 BiRD2 Systems and Synthetic Biology2 NMR Workflow1 COVID-19 PubSeq: Public SARS-CoV-2 Sequence Resource1 Italy-Covid-data-Portal1 EOSC-Life-WP6-Demos1 EOSC-Life WP31 MOLGENIS1 Janis1 IAA-CSIC1 FAME1 CHU Limoges - UF9481 Bioinformatique / CNR Herpesvirus1 HecatombDevelopment1 OpenEBench1 Bioinformatics and Biostatistics (BIO2 ) Core1 VIB Bioinformatics Core1 Single Cell Unit1 emo-bon1 CINECA1 Toxicology community1 Gyn Department1 AGRF BIO1 X-omics1 ELIXIR Belgium1 CAPSID1 Edinburgh Genomics1 BCCM_ULC1 Computational Science at HZDR1 Big data in biomedicine1 Guigó lab1 Statistical genetics1 Delineating Regions-of-interest for Mass Spectrometry Imaging by Multimodally Corroborated Spatial Segmentation1 Bioinformatics Unit @ CRG1 ELIXIR Proteomics1 IRRI Bioinformatics Group1 Zavolan Lab1 Metabolomics-Reproducibility1 NGFF Tools1 Bioinformatics workflows for life science1 Helmholtz Scientific Project Workflow Platform1 BY-COVID Baseline Use Case: SARS-CoV-2 Vaccine(s) effectiveness in preventing SARS-CoV-2 infection1 Lake Erken modelling setup1 EOSC-Life WP3 OC Team, cross RI project1 ARA-dev1 Mendel Centre for Plant Genomics and Proteomics1 WP6 - Tsunamis1 Metagenomic tools1 Pillar I: Manufacturing1 Polygenic Score Catalog1 MLme: Machine Learning Made Easy1 Dioscuri TDA1 MMV-Lab1 EBP-Nor1 Evaluation of Swin Transformer and knowledge transfer for denoising of super-resolution structured illumination microscopy data1 Pangenome database project1 HP2NET - Framework for construction of phylogenetic networks on High Performance Computing (HPC) environment1 Building spatio-temporal workflows in Galaxy1 CEMCOF1 Jackson Laboratory NGS-Ops1 BRAIN - Biomedical Research on Adult Intracranial Neoplasms1 Institute for Human Genetics and Genomic Medicine Aachen1 Plant-Food-Research-Open1 KrauthammerLab1 ELIXIR Metabolomics1 Medvedeva Lab1 16S rRNA Analysis1 Protein-protein and protein-nucleic acid binding site prediction research1 IDUN - Drug Delivery and Sensing1 MAXOMOD1 NkuyfqLab1 EnrichDO1 Application Security - Test Crypt4GH solutions1 RenLabBioinformatics1 National Computational Infrastructure (NCI) WorkflowHub team1 Into the deep1 CPM1 Research Data Management ICE-21 LiDAR1 Senckenberg Digital Collection and Biodiversity Information Technologies1 FAIRagro M4.41 QuackenbushLab1 Virus sequencing team1 SOS1 CSUbioinformatics1 SIMEXP1 Kasmanas1 Structural Variation Analysis1 CausalCoxMGM Team1 CrustyBase1 Applied Computational Cancer Research1 Click-qPCR1 BAID Team1 Vector informatics and genomics group1 AlmondBreedingLab1 Artificial Design for Intelligent Breeding1 MTB Bioinformatics Workflows1 CMG-GUTS1 Machine Learning Techniques in Microbiome1 EI Papatheodorou Group1 ColoPola: A polarimetric imaging dataset for colorectal cancer detection1 AI in Zhou Lab1 Gevaert Lab1 AMRMALDI1 SolutionMake1 GENEX1 iPol1 zxfenglab1 BioX Fanatics1 Li-Omics Lab1 ZiemertLab1 Song Lab1 PanGIA1 Plant Computational Genomics1 Deveson Lab1 Transcriptomics in unexplained recurrent pregnancy loss1 datafun1 More...

Galaxy493 Independent Teams362 nf-core86 BioExcel80 Australian BioCommons76 eFlows4HPC60 ELIXIR52 COVID-19 Biohackathon31 ERGA26 A Digital Twin for GEOphysical extremes (DT-GEO)24 Paris Biofoundry11 EOSC4Cancer9 Sanger Tree of Life8 Biodiversity Genomics Europe (BGE)7 EcoLiDAR - ecological applications of LiDAR point clouds7 Bioinformatics Core CEITEC6 DISSCo - Distributed System of Scientific Collections5 HoloFood5 Proteomics CEITEC4 EOSC-Life3 BioDT3 Hiroshima workflow community3 iBOL Europe3 ELIXIR Belgium2 GenomeDataCompression2 EIRENE-CZ2 WGGC2 EOSC-Life-WP61 BeYond-COVID (BY-COVID)1 JKU 1 IRRI-Bioinformatics1 HELIPORT1 Coupled Catchment Lake Modelling1 AquaINFRA1 IKIM 16S Analysis1 MAXOMOD1 NkuyfqLab_Space1 Microbiome Machine Learning UGR1 Plant Computational Genomics Lab1 Garvan Institute of Medical Research1 More...

Adam Hospital76 Genís Bayarri75 Anna Syme24 Diego De Panis18 Bart Nijsse17 Jasper Koehorst15 Yvan Le Bras14 Tracy Chew13 Georgina Samaha11 Wolfgang Maier10 Marie Jossé10 Patrick Austin10 Laura Rodriguez-Navas9 Raül Sirvent9 Tom Underwood9 Alexander Belozerov9 Martin Beracochea8 Rosemarie Sadsad8 Jean-Marie Burel8 Anthony Bretaudeau8 Delphine Lariviere8 Cristian Tatu8 Romane Libouban8 José Mª Fernández7 Cali Willet7 Saskia Hiltemann7 Javier Conejero7 Jinhu Wang7 W. Daniel Kissling7 Douglas Lowe6 Paul Zierep6 Pablo Goitia6 Coline Royaux5 Sergi Sayols5 Oliver Woolland5 Aldar Cabrelles5 Riccardo Massei5 Melchior du Lac4 Friederike Ehrhart4 Gareth Price4 Laura Leroi4 Nicolas Schmid4 Jorge Ejarque4 Bryan Raubenolt4 Ambarish Kumar3 Pavankumar Videm3 Helena Rasche3 Juma Bayjan3 Ozan Ozisik3 Valentine Murigneux3 Alexandre Cormier3 Patrick Durand3 Cyril Noel3 Mike Thang3 Volodymyr Savchenko3 Laurence Livermore3 Germán Royval3 Cristóbal Gallardo3 Cenna Doornbos3 Jeanette Reinshagen3 Ekaterina Sakharova3 Tom Brown3 Konstantinos Kyritsis3 Rosa M Badia3 Damon-Lee Pointon3 Sora Yonezawa3 Stian Soiland-Reyes2 Ivan Topolsky2 Luca Pireddu2 Anne Fouilloux2 Peter van Heusden2 Michael R. Crusoe2 Julian Uszkoreit2 Pierre Cuzin2 Philipp Gormanns2 Kary Ocaña2 Pierre Marin2 Varsha Kale2 Tatiana Gurbich2 Cristiane Taniguti2 Peter Menzel2 Diego Garrido-Martín2 Roderic Guigó2 Stevie Pederson2 Andrea Furlani2 Ben Price2 Johannes Kemper2 Phuong Doan2 Denys Savchenko2 Kateřina Storchmannová2 Changlin Ke2 Ziad Al-Bkhetan2 Helge Hecht2 Kristina Gomoryova2 Zargham Ahmad2 Clea Siguret2 Eli Chadwick2 Nicolò Giacomini2 Pauline Seguineau2 Kisaru Liyanage2 Matthew Downton2 Dan Parsons2 Andrei Variu2 Cenny Taslim2 Audrey Bihouee2 Martijn Melissen2 Bert Droesbeke1 Camille Juigné1 Krzysztof Poterlowicz1 Willem de Koning1 Pau Andrio1 Johan Gustafsson1 Matthias Haimel1 Carlos Oscar Sorzano Sanchez1 Paul Brack1 Sarah Beecroft1 Marco De La Pierre1 daniel rickert1 Richard Lupat1 Johannes Köster1 Valentin Tilloy1 Michael Roach1 Elida Schneltzer1 Luiz Gadelha1 Asier Gonzalez-Uriarte1 Woosub Shin1 Leah Kemp1 Ryan Patterson-Cross1 Haris Zafeiropoulos1 Hrishikesh Dhondge1 Kim Philipp Jablonski1 Pasi Korhonen1 Marvin Martens1 Tazro Inutano1 Marlene Rezk1 Tong LI1 Casper de Visser1 Anton Nekrutenko1 Jasper Ouwerkerk1 Benjamin Wingfield1 Anna Niehues1 Marie-Dominique Devignes1 Tim Booth1 Samuel Lambert1 Alejandra Escobar1 Katherine Farquharson1 Dennis Dollée1 Lucas Cruz1 Pablo Riesgo Ferreiro1 Felicita Gernhardt1 Andrey Prjibelski1 Xiaokang Zhang1 Zavolan Lab1 Mahnoor Zulfiqar1 Veit Schwämmle1 Anton Korobeynikov1 Luiz Gadelha1 Vasiliki Panagi1 Khaled Jum'ah1 Jorrit Mesman1 Elisabetta Spinazzola1 Agata Kilar1 Jessica Gomez-Garrido1 Sagane Joye-Dind1 Akshay Akshay1 Louise Cordrie1 Davide Gurnari1 Giovanni Macedonio1 David Yuan1 Justin Sonneck1 Daniele Lezzi1 William Eagles1 Zafran Hussain Shah1 Fernando Vázquez-Novoa1 Nandan Deshpande1 Michael Hall1 Rafael Terra1 Ian Brennan1 Aishwarya Iyer1 Dominik Lux1 Bérénice Batut1 Ashish Bhawel1 Daniel Bauer1 Andrii Neronov1 Amy Curwin1 Arnau Soler Costa1 Thomas Roetzer-Pejrimovsky1 Xiaolong Luo1 Elliott J. Price1 Wudmir Rojas1 David Potesil1 Carlos Classen1 Jordi Rambla1 Timon Schlegel1 Pavel Akhtyamov1 Francesco Messina1 Sebastian Röner1 Ann-Kathrin Dörr1 Saim Momin1 仕卓 张1 Mahesh Binzer-Panchal1 Martin Pippel1 Jen-Hung Wang1 Fabian Hausmann1 Qiang Ye1 Birgit Rijvers1 Liang Cheng1 Benjamin Istace1 Jean-Marc Aury1 Caroline Belser1 Kieran Atkins1 Tobias Bachmann1 Albert Puiggros1 Mitchell O'Brien1 Cedric Bhihe1 Georgina Díez1 Jens Krumsieck1 Viola Fanfani1 Lorenz Gruber1 Katerina Hanakova1 Wendi Bacon1 Hugo Lefeuvre1 Natasha Clarke1 Jiamian He1 Lune Bellec1 Jonas Kasmanas1 Ryo Nozu1 Robin Navest1 Huihai Wu1 Qibo Xu1 Samuel Chaffron1 Hana Plešingerová1 Won-Min Song1 Henry Schober1 Evangelos Karatzas1 Ryo Mameda1 Alexander Hambley1 More...

Workflows in EuroScienceGateway48 BioCommons ‘Bring Your Own Data’ Expansion Project39 Biodiversity & ecology workflows28 Interactive Jupyter Notebooks for FAIR and reproducible biomolecular simulation workflows17 Tutorials for BioExcel Building Blocks (BioBB)11 BY-COVID related workflows11 CryoEM Facility Workflows10 scRNAseq processing in galaxy8 COMPSs Workflows from 2024 Tutorial8 TSI annotation workflows7 ERGA Assembly Galaxy Long Reads & Hi-C Pipelines (Hifiasm-solo + Purge_Dups + YaHS)7 Freely accessible ready to use global infrastructure and workflows for SARS-CoV-2 monitoring6 IDR6 ERGA Assembly Galaxy HiFi & HiC Pipelines (Hifiasm-HiC + Purge_Dups + YaHS)6 16S Microbial Analysis with mothur (on Galaxy Australia)6 ERGA Assembly Galaxy ONT+Illumina & HiC Pipelines (NextDenovo-HyPo + Purge_Dups + YaHS)6 ERGA Assembly Galaxy ONT+Illumina & HiC Pipelines (Flye-HyPo + Purge_Dups + YaHS)6 EC-Earth3 Workflow Collection6 BioExcel Building Blocks (BioBB) Protein MD Setup Tutorials5 EuCanImage FHIR ETL Implementation5 HiFi genome assembly on Galaxy4 Epigenomic workflows4 Vertebrate Genomes Pipelines (VGP) workflows3 CEITEC CryoEM Facility Workflows3 ERGA Assembly Snakemake HiFi & HiC Pipelines3 Genome Evaluation for ERGA-BGE Reports3 Genome Assembly Workflows for ERGA-BGE genomes3 TronFlow2 Sanger Tree of Life Assembly method1 More...

Bioinformatics51 Sequence assembly28 Genomics27 Whole genome sequencing26 Metagenomics21 Genetic variation19 Transcriptomics17 Biomedical science13 Ecology13 Biodiversity12 Computer science11 Workflows10 Gene expression9 Population genomics9 Imaging8 Machine learning8 Microbiology8 Sequence analysis8 Synthetic biology8 Bioimaging7 Data mining7 Data management6 Metagenomic sequencing6 Computational biology5 Drug discovery5 Epigenomics5 Oncology5 Compound libraries and screening4 Copy number variation4 Gene transcripts4 Physics4 Proteomics4 Sequencing4 Data integration and warehousing3 Data quality management3 Data visualisation3 DNA mutation3 DNA polymorphism3 Genetics3 Preclinical and clinical studies3 Protein interactions3 Rare diseases3 Sample collections3 Virology3 Biomolecular simulation2 Cell biology2 Cheminformatics2 Computational chemistry2 Data curation and archival2 Environmental sciences2 Exome sequencing2 Functional genomics2 Gene structure2 Human genetics2 Infectious disease2 Mapping2 Metatranscriptomics2 Microbial ecology2 Molecular interactions, pathways and networks2 Pharmacology2 Protein interaction experiment2 Proteins2 Quantitative genetics2 RNA-Seq2 Structural variation2 Agricultural science1 Biochemistry1 ChIP-seq1 Comparative genomics1 Cryogenic electron microscopy1 DNA packaging1 Drug development1 FAIR data1 Function analysis1 Genotype and phenotype1 Immunoinformatics1 Immunology1 Immunoproteins and antigens1 Marine biology1 Medical imaging1 Medical informatics1 Medicinal chemistry1 Metabarcoding1 Metabolomics1 Mobile genetic elements1 Molecular genetics1 Nucleic acid sites, features and motifs1 Ontology and terminology1 Pathology1 Phylogenetics1 Phylogenomics1 Protein binding sites1 Protein folds and structural domains1 Protein structure analysis1 Protein variants1 Proteomics experiment1 Public health and epidemiology1 Reproductive health1 Single-cell sequencing1 Small molecules1 Statistics and probability1 Structural genomics1 Systems biology1 Taxonomy1 Translational medicine1 More...

Sequencing quality control20 Genome assembly18 Sequence assembly12 Variant calling12 Taxonomic classification9 Expression analysis7 Genome annotation7 Sequence alignment7 Variant filtering7 Annotation6 Gene functional annotation6 Sequence clustering6 Conversion4 De-novo assembly4 Sequence read processing4 Visualisation4 Calculation3 Copy number variation detection3 Data filtering3 Data retrieval3 Differential gene expression profiling3 Gene expression profiling3 Gene-set enrichment analysis3 Haplotype mapping3 Modelling and simulation3 Protein interaction network analysis3 Read mapping3 Sequence trimming3 Transcriptome assembly3 Variant classification3 Antimicrobial resistance prediction2 Correlation2 Feature extraction2 Genetic mapping2 Genome visualisation2 Image analysis2 Indel detection2 Prediction and recognition2 Protein interaction network prediction2 Protein-protein interaction analysis2 RNA-Seq analysis2 Scaffolding2 Sequence annotation2 Sequence assembly validation2 Sequence assembly visualisation2 SNP annotation2 SNP detection2 Text mining2 Weighted correlation network analysis2 Alignment1 Binding site prediction1 Classification1 Clustering1 Contact map calculation1 Copy number estimation1 Data analysis1 Data handling1 Data sorting1 Differential protein expression profiling1 Dimensionality reduction1 DNA barcoding1 Enrichment analysis1 Expression correlation analysis1 Expression profile clustering1 Format detection1 Gene prediction1 Generation1 Genome alignment1 Genome analysis1 Genome comparison1 Global alignment1 ID mapping1 Information retrieval1 k-mer counting1 Local alignment1 Mapping1 Metabolic pathway prediction1 Named-entity and concept recognition1 Network analysis1 Nucleic acid property calculation1 Operation1 Pairwise sequence alignment1 Peptide identification1 Phasing1 Phylogenetic inference1 Principal component analysis1 Protein identification1 Read binning1 Relation extraction1 Sequence alignment analysis (site correlation)1 Sequence contamination filtering1 Sequence cutting1 Sequence distance matrix generation1 Sequence profile generation1 Single particle analysis1 Standardisation and normalisation1 Statistical calculation1 Statistical modelling1 Structural variation detection1 Structure-based sequence alignment1 Text annotation1 Transcription factor binding site prediction1 Validation1 Variant prioritisation1 More...

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