Workflows
What is a Workflow?Filters
Query
Created At
Updated At
Tool
antiSMASH1
Bakta1
CheckM1
CheckM21
CoverM1
eggNOG-mapper v21
Flye1
GTDB1
Medaka1
metabuli1
MetaCoAG1
Minimap21
MMseqs21
NextPolish1
SAMtools1
SemiBin1
strobealign1
VAMB1
More...
Workflow type
Nextflow1
Submitter
Caner Bağcı1
Team
ZiemertLab1
Space
Independent Teams1
Maturity
Stable1
1
Workflow visible to you, out of a total of 1
Stable
Soil Metagenome Pipeline
Soil Metagenome Pipeline is a modular, Nextflow DSL2 workflow for assembling, polishing, binning, annotating, and functionally characterizing complex soil metagenomes. It orchestrates state-of-the-art tools for long- and short-read metagenomics, generates high-quality MAGs, assigns taxonomy, and screens for biosynthetic gene clusters (BGCs).
What it does
- Assembles long-read metagenomes (e.g., ONT) with Flye and optionally polishes with Medaka and/or NextPolish using ...