Workflows
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Query
Created At
Updated At
Tool
YaHS1
BUSCO5
MultiQC5
Stacks5
FastQC4
Bwa-mem23
QUAST3
Bandage2
BEDTools2
fastp2
Flye2
Minimap22
Racon2
SAMtools2
StringTie2
Biopython1
compute_sequence_length1
Cutadapt1
FASTX-Toolkit1
FGENESH1
GenomeScope 2.01
gfastats1
ggplot21
HISAT21
Medaka1
Merqury1
NanoPlot1
RepeatMasker1
RepeatModeler1
seqtk1
TransDecoder1
Trimmomatic1
More...
Workflow type
Galaxy1
Tag
TSI1
Submitter
Anna Syme1
Space
Australian BioCommons1
Scaffolding using HiC data with YAHS
This workflow has been created from a Vertebrate Genomes Project (VGP) scaffolding workflow.
- For more information about the VGP project see https://galaxyproject.org/projects/vgp/.
- The scaffolding workflow is at https://dockstore.org/workflows/github.com/iwc-workflows/Scaffolding-HiC-VGP8/main:main?tab=info
- Please see that link for the workflow diagram.
Some minor changes have been made to better fit with TSI project data:
- optional inputs of SAK info ...