Workflows
What is a Workflow?Filters
Query
Created At
Updated At
Workflow type
Snakemake1
Tag
Cellranger1
FAIR workflows1
FastQC1
LiftOver1
MultiQC1
scRNA-seq1
Snakemake1
Transcriptomics1
More...
Submitter
Ryan Patterson-Cross1
Space
Independent Teams1
Creator
Ryan Patterson-Cross1
Maturity
Stable1
1
Workflow visible to you, out of a total of 1
Stable
polya_liftover - sc/snRNAseq Snakemake Workflow
A [Snakemake][sm] workflow for using PolyA_DB and UCSC Liftover with Cellranger.
Some genes are not accurately annotated in the reference genome. Here, we use information provide by the [PolyA_DB v3.2][polya] to update the coordinates, then the [USCS Liftover][liftover] tool to update to a more recent genome. Next, we use [Cellranger][cr] to create the reference and count matrix. Finally, by taking advantage of the integrated [Conda][conda] and ...