Workflows
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Created At
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Tool
SeqSero21
shovill2
ABRicate1
BBMap1
BWA1
hAMRonization1
MOB-suite1
pilon1
SISTR1
SPAdes1
staramr1
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Workflow type
Galaxy1
Submitter
Dennis Dollée1
Team
Seq4AMR1
Space
Independent Teams1
Maturity
Work-in-progress1
1
Workflow matching the given criteria:
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Tool:
SeqSero21
Maturity:
Work-in-progress1
Work-in-progress
With this galaxy pipeline you can use Salmonella sp. next generation sequencing results to predict bacterial AMR phenotypes and compare the results against gold standard Salmonella sp. phenotypes obtained from food.
This pipeline is based on the work of the National Food Agency of Canada. Doi: 10.3389/fmicb.2020.00549
| tool | version | license |
|---|---|---|
| SeqSero2 | 1.2.1 | GNU GPL v2.0 |
| ... |
