Workflows
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Created At
Updated At
Workflow type
Snakemake2
Submitter
Peter Menzel2
Team
Peter Menzel's Team2
Space
Independent Teams2
Creator
Peter Menzel2
Operation annotations
Genome assembly1
Maturity
Stable2
2
Workflows visible to you, out of a total of 2
Stable
score-assemblies
A Snakemake-wrapper for evaluating de novo bacterial genome assemblies, e.g. from Oxford Nanopore (ONT) or Illumina sequencing.
The workflow includes the following programs:
...
Stable
ont-assembly-snake
A Snakemake wrapper for easily creating de novo bacterial genome assemblies from Oxford Nanopore (ONT) sequencing data, and optionally Illumina data, using any combination of read filtering, assembly, long and short read polishing, and reference-based polishing.
Included programs
| read filtering | assembly | long read polishing | short read polishing | reference-based polishing |
|---|---|---|---|---|
| Filtlong | ||||
| ... |
