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Nextflow1
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bash1
bioformats1
bioformats2raw1
bioimaging1
BioStudies1
Conversion1
file conversion1
image file format1
imaging1
Nextflow1
NGFF1
OME-TIFF1
OME-Zarr1
Python1
S31
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bugra oezdemir1
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1
Workflow visible to you, out of a total of 1
Work-in-progress
BatchConvert 
A command line tool for converting image data into either of the standard file formats OME-TIFF or OME-Zarr.
The tool wraps the dedicated file converters bfconvert and bioformats2raw to convert into OME-TIFF or OME-Zarr, respectively. The workflow management system NextFlow is used to perform conversion in parallel for batches of images.
The tool also wraps s3 and Aspera clients (go-mc and aspera-cli, respectively). ...
