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Snakemake1
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Michael Hall1
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Michael Hall1
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Pangenome databases provide superior host removal and mycobacteria classification from clinical metagenomic data
Hall, M, Coin, L., Pangenome databases provide superior host removal and mycobacteria classification from clinical metagenomic data. bioRxiv 2023. doi: [10.1101/2023.09.18.558339][doi]
Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and classification of M. tuberculosis reads.
This repository contains the code and ...