Workflows
What is a Workflow?Filters
Query
Created At
Updated At
Workflow type
Galaxy1
Tag
covid-191
Submitter
Matteo Chiara1
Space
Independent Teams1
Maturity
Work-in-progress1
1
Workflow visible to you, out of a total of 1
Work-in-progress
This WF is based on the official Covid19-Galaxy assembly workflow as available from https://covid19.galaxyproject.org/genomics/2-assembly/ . It has been adapted to suit the needs of the analysis of metagenomics sequencing data. Prior to be submitted to INDSC databases, these data need to be cleaned from contaminant reads, including reads of possible human origin.
The assembly of the SARS-CoV-2 genome is performed using both the Unicycler and the SPAdes assemblers, similar to the original WV.
To ...
Download