Teams

Our research group Methods and Algorithms for Bioinformatics belongs to French National Center for Scientific Research (CNRS) and is hosted by the Computer Science Dpt of University of Montpellier (in the LIRMM joint unit UMR 5506). We offer interactive web services, software, and programming libraries for bioinformatics on the ATGC bioinformatic platform. Well known software from our group are for instance ...

Medical bioinformatics group of the Medical Proteome Center at the Ruhr University Bochum

Automated pipeline for generating residue-level lipid contact annotations from PDB structures. The workflow queries RCSB PDB for structures containing lipid chemical components (117 recognized codes), downloads original PDB files, calculates all-atom heavy-atom contacts at 4.0 Angstrom cutoff, clusters sequences at 30% identity using MMseqs2, and partitions into train/validation/test splits. Produces a complete dataset of 4,704 proteins with 8,055,325 annotated residues.

Research areas: - Structure, evolution and maintenance of telomeres and their roles in chromosome stability, DNA repair and plant speciation - Epigenetic mechanisms in the regulation of gene expression, chromatin assembly, genome stability and telomere homeostasis - Transcription, replication and DNA repair in the context of nuclear and nucleolar architecture

This team is dedicated to the development of the Meta-NanoSim tool: https://github.com/bcgsc/nanosim