Teams

Workflows created as part of the Earth Biogenome Project Norway

Our team focuses on advancing the field of Dependent Task Scheduling in edge computing environments. We specialize in modeling dependent tasks as Directed Acyclic Graphs (DAGs) to optimize resource allocation and improve overall system performance in edge computing scenarios. Our research encompasses:1. Development of novel scheduling algorithms for DAG-based tasks in edge computing2. Performance analysis and optimization of existing scheduling strategies3. Implementation and evaluation of DAG-based ...

Sequencing facility at the University of Edinburgh

The Earlham Institute Papatheodorou Group leads a programme of data-intensive science for cellular genomics and FAIR data infrastructure. The group hosts highly experienced data scientists and software developers to enable the development of software and metadata standards for openly and reproducibly sharing different types of omics data and images. The team also develop end-to-end pipelines for the standardised analyses of single-cell and spatial transcriptomics datasets.

EJPRD WP13 case-studies workflows from phase 1.

Workflows associated with the ELIXIR Biodiversity Community. The domain focuses on genomics, ecology, biogeography and the evolution of wildlife across all kingdoms of life.

Proteomics is the large-scale experimental study of the proteome, all the proteins produced or modified by an organism or system. Proteomics can tell us about when and where proteins are expressed, protein production and degradation rates, the characterisation of protein post-translational modifications (e.g. phosphorylation), elucidating protein structures, and protein-protein interactions.This information can be combined with data from other omics disciplines (genomics, metagenomics, metabolomics) ...