Workflows
What is a Workflow?Filters
Query
Created At
Updated At
Workflow type
Common Workflow Language1
Submitter
Konstantinos Kyritsis1
Space
Independent Teams1
Topic annotations
RNA-Seq analysis1
Operation annotations
RNA-Seq analysis1
Variant calling6
Annotation5
Sequencing quality control5
Sequence assembly4
Data retrieval3
Gene-set enrichment analysis3
Protein interaction network analysis3
Variant classification3
Variant filtering3
Conversion2
Correlation2
Gene functional annotation2
Genome annotation2
Haplotype mapping2
Modelling and simulation2
Prediction and recognition2
Protein interaction network prediction2
SNP annotation2
Weighted correlation network analysis2
Analysis1
Antimicrobial resistance prediction1
Binding site prediction1
Calculation1
Classification1
Clustering1
Contact map calculation1
Copy number variation detection1
Data handling1
Differential gene expression profiling1
Dimensionality reduction1
DNA barcoding1
Enrichment analysis1
Expression correlation analysis1
Feature extraction1
Format detection1
Genome assembly1
ID mapping1
Image analysis1
k-mer counting1
Metabolic pathway prediction1
Named-entity and concept recognition1
Network analysis1
Nucleic acid property calculation1
Peptide identification1
Phylogenetic inference1
Protein identification1
Protein-protein interaction analysis1
Read mapping1
Relation extraction1
Sequence alignment analysis (site correlation)1
Sequence annotation1
Sequence contamination filtering1
Sequence distance matrix generation1
Sequence profile generation1
Single particle analysis1
Standardisation and normalisation1
Taxonomic classification1
Text annotation1
Text mining1
Transcription factor binding site prediction1
More...
Maturity
Stable1
1
Workflow matching the given criteria:
(Clear all filters)
Operation annotations:
RNA-Seq analysis1
Stable
A CWL-based pipeline for processing RNA-Seq data (FASTQ format) and performing differential gene/transcript expression analysis.
On the respective GitHub folder are available:
- The CWL wrappers for the workflow
- A pre-configured YAML template, based on validation analysis of publicly available HTS data
- A table of metadata (
mrna_cll_subsets_phenotypes.csv), based on the same validation analysis, to serve as an input example for the design of comparisons during differential expression ...
Type: Common Workflow Language
Creators: Konstantinos Kyritsis, Nikolaos Pechlivanis, Fotis Psomopoulos
Submitter: Konstantinos Kyritsis
