Workflows
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BUSCO1
GenomeScope 2.01
Hifiasm1
Mash1
Merqury1
Meryl1
MitoHiFi1
purge_dups1
QUAST1
SAMtools1
TaxonKit1
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ancient dna1
Bioinformatics1
conservation genomics1
genome erosion1
genome_assembly1
historical dna1
modern dna1
population genomics1
whole genome sequencing1
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Sequence assembly1
2
Workflows visible to you, out of a total of 2
Stable
GenErode pipeline
GitHub repository for GenErode, a Snakemake workflow for the analysis of whole-genome sequencing data from historical and modern samples to study patterns of genome erosion.
Documentation
The full pipeline documentation can be found on the repository wiki.
Citation
If you've ...
Work-in-progress
Swedish Earth Biogenome Project - Genome Assembly Workflow
The primary genome assembly workflow for the Earth Biogenome Project at NBIS.
Workflow overview
General aim:
flowchart LR
hifi[/ HiFi reads /] --> data_inspection
ont[/ ONT reads /] --> data_inspection
hic[/ Hi-C reads /] --> data_inspection
data_inspection[[ Data inspection ]] --> preprocessing
preprocessing[[ Preprocessing ]] --> assemble
assemble[[ Assemble ]] --> validation
validation[[ Assembly
...