Workflows

What is a Workflow?
2 Workflows visible to you, out of a total of 2
Stable

GenErode pipeline

Snakemake

GitHub repository for GenErode, a Snakemake workflow for the analysis of whole-genome sequencing data from historical and modern samples to study patterns of genome erosion.

Documentation

The full pipeline documentation can be found on the repository wiki.

Citation

If you've ...

Type: Snakemake

Creators: None

Submitter: Verena Kutschera

Work-in-progress

Swedish Earth Biogenome Project - Genome Assembly Workflow

The primary genome assembly workflow for the Earth Biogenome Project at NBIS.

Workflow overview

General aim:

flowchart LR 
hifi[/ HiFi reads /] --> data_inspection 
ont[/ ONT reads /] --> data_inspection 
hic[/ Hi-C reads /] --> data_inspection 
data_inspection[[ Data inspection ]] --> preprocessing 
preprocessing[[ Preprocessing ]] --> assemble 
assemble[[ Assemble ]] --> validation 
validation[[ Assembly
...

Type: Nextflow

Creators: Mahesh Binzer-Panchal, Martin Pippel

Submitter: Mahesh Binzer-Panchal

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