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3 Workflows visible to you, out of a total of 3
Stable

NGS Equimolar Pooling Calculator

A web-based tool for calculating equimolar pooling volumes from complex sub-pools for Next-Generation Sequencing (NGS).

About

This calculator helps researchers determine the correct volumes to take from each pool when combining multiple complex sub-pools of NGS libraries for sequencing. It ensures that each individual sample contributes an equal number of molecules to the final sequencing run, resulting in more balanced coverage.

Features

  • Calculate ...

Type: Unrecognized workflow type

Creator: Ben Price

Submitter: Ben Price

DOI: 10.48546/workflowhub.workflow.1344.1

Work-in-progress

Gene_fetch

This tool fetches gene sequences from NCBI databases based on taxonomy IDs (taxids) or taxonomic information. It can retrieve both protein and nucleotide sequences for various genes, including protein-coding genes (e.g., cox1, cytb, rbcl, matk) and rRNA genes (e.g., 16S, 18S).

Feature highlight

  • Fetch protein and/or nucleotide sequences from NCBI GenBank database.
  • Handles both direct nucleotide sequences and protein-linked nucleotide searches (CDS extraction includes fallback ...

Type: Python

Creators: Dan Parsons, Ben Price

Submitter: Dan Parsons

Gene_fetch

This tool fetches gene sequences from NCBI databases based on taxonomy IDs (taxids) or taxonomic information. It can retrieve both protein and nucleotide sequences for various genes, including protein-coding genes (e.g., cox1, cytb, rbcl, matk) and rRNA genes (e.g., 16S, 18S).

Feature highlight

  • Fetch protein and/or nucleotide sequences from NCBI GenBank database.
  • Handles both direct nucleotide sequences and protein-linked nucleotide searches (CDS extraction includes fallback ...

Type: Python

Creators: Dan Parsons, Ben Price

Submitter: Dan Parsons

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