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Workflow type
Shell Script1
Tag
Bioinformatics1
differential_expression1
networks1
spatial transcriptomics1
Submitter
Pedro Carvalho1
Team
Polyploid Spatial Transcriptomics Team1
Space
Independent Teams1
Topic annotations
Gene expression1
Molecular interactions, pathways and networks1
Plant biology1
Transcriptomics1
Operation annotations
Clustering1
Network visualisation1
RNA-Seq analysis1
Scientific disciplines
Biochemistry, Genetics and Molecular Biology1
Maturity
Stable1
1
Workflow visible to you, out of a total of 1
Stable
POLY_PIPELINE
A data analysis pipeline for STOmics data tailored to polyploid organisms.
Contributing
Contributions are welcome! Please fork the repository and submit a pull request.
See the CONTRIBUTING.md for details.
Main Pipeline (Cluster Execution)
The core scripts are optimized for SGE and PBS clusters execution. They use relative paths and must be run from the POLY_PIPELINE main directory.
Data Input
The input file must be the ...
