A comprehensive Galaxy workflow for the end-to-end analysis of transcriptomics data, featuring automated QC, clustering, spatial statistics, cell type annotation, and cell-cell communication.
Type: Galaxy
Creators: Amirhossein Naghsh Nilchi, Pavankumar Videm, Björn Grüning
Submitter: Amirhossein Naghsh Nilchi
Overview
Developmental version of MSC: This github page contains developmental version of R package for Multi-scale clustering (MSC) to perform single-cell transcriptome clustering. The manuscript is currently under review.
Installation:
MEGENA needs to be installed, prior to MSC installation: library(devtools); install_github("songw01/MEGENA");
For installation for developmental github version: library(devtools); install_github("songlabcodes/MSC");
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