1 item tagged with 'bowtie2'.
Work-in-progress
Workflow for NonSpliced RNAseq data with multiple aligners.
Steps:
- workflow_quality.cwl:
- FastQC (control)
- fastp (trimming)
- bowtie2 (read mapping)
- sam_to_sorted-bam
- featurecounts (transcript read counts)
- kallisto (transcript [pseudo]counts)
Created: 24th Nov 2020 at 11:05, Last updated: 8th Jun 2021 at 08:32