2 items tagged with 'blast'.
Work-in-progress
ONTViSc (ONT-based Viral Screening for Biosecurity)
Introduction
eresearchqut/ontvisc is a Nextflow-based bioinformatics pipeline designed to help diagnostics of viruses and viroid pathogens for biosecurity. It takes fastq files generated from either amplicon or whole-genome sequencing using Oxford Nanopore Technologies as input.
The pipeline can either: 1) perform a direct search on the sequenced reads, 2) generate clusters, 3) assemble the reads to generate longer contigs or 4) directly ...
Type: Nextflow
Creators: Marie-Emilie Gauthier, Craig Windell, Magdalena Antczak, Roberto Barrero
Submitter: Magdalena Antczak
Created: 4th Dec 2023 at 01:42, Last updated: 19th Feb 2024 at 05:24
Work-in-progress
Mapping against all plant virus then make contig out of the mapped reads then blast them.
Created: 4th Feb 2021 at 09:10, Last updated: 10th Feb 2023 at 10:06