2 items tagged with 'BAM'.
Work-in-progress
GRAVI: Gene Regulatory Analysis using Variable Inputs
This is a snakemake
workflow for:
- Performing sample QC
- Calling ChIP peaks
- Performing Differential Binding Analysis
- Comparing results across ChIP targets
The minimum required input is one ChIP target with two conditions.
Full documentation can be found here
Snakemake Implementation
The basic workflow is written snakemake
, requiring at least v7.7, and can be called using the following
...
Created: 21st Mar 2023 at 05:48
Stable
BAM-to-FASTQ-QC
General recommendations for using BAM-to-FASTQ-QC
Please see the Genome assembly with hifiasm on Galaxy Australia
guide.
Acknowledgements
The workflow & the doc_guidelines template used are supported by the Australian BioCommons via Bioplatforms Australia funding, the Australian Research Data Commons (https://doi.org/10.47486/PL105) ...
Created: 21st Oct 2021 at 06:52, Last updated: 17th Oct 2022 at 03:51