Short paired-end read analysis to provide quality analysis, read cleaning and taxonomy assignation

Assembly of bacterial paired-end short read data with generation of quality metrics and reports

Workflow for short paired end reads quality control, trimming and filtering. Multiple paired datasets will be merged into single paired dataset. Summary:

• Sequali QC on raw data files
• fastp for read quality trimming
• BBduk for phiX and rRNA filtering (optional)
• Filter human reads using Hostile (optional)
• Custom read filtering using Hostile (optional)
• Sequali QC on filtered (merged) data

Other UNLOCK workflows on WorkflowHub: https://workflowhub.eu/projects/16/workflows?view=default ...