Workflow for short paired end reads quality control, trimming and filtering. Multiple paired datasets will be merged into single paired dataset. Summary:

• Sequali QC on raw data files
• fastp for read quality trimming
• BBduk for phiX and rRNA filtering (optional)
• Filter human reads using Hostile (optional)
• Custom read filtering using Hostile (optional)
• Sequali QC on filtered (merged) data

Other UNLOCK workflows on WorkflowHub: https://workflowhub.eu/projects/16/workflows?view=default ...