1 item tagged with 'CUTnRUN'.
This workflow take as input a collection of paired fastq. Remove adapters with cutadapt, map pairs with bowtie2 allowing dovetail. Keep MAPQ30 and concordant pairs. BAM to BED. MACS2 with "ATAC" parameters.
Created: 20th Oct 2022 at 03:01, Last updated: 21st Jan 2023 at 03:01