1 item tagged with 'rice'.
Work-in-progress
SNP-Calling
GATK Variant calling pipeline for genomic data using Nextflow
Quickstart
Install Nextflow using the following command:
curl -s https://get.nextflow.io | bash
Index reference genome:
$ bwa index /path/to/reference/genome.fa
$ samtools faidx /path/to/reference/genome.fa
$ gatk CreateSequenceDictionary -R /path/to/genome.fa -O genome.dict
Launch the pipeline execution with ...
Created: 21st Mar 2023 at 05:30