1 item tagged with 'name:PROFILING'.
Stable
The workflow takes a trimmed Illumina paired-end reads collection, runs Meryl to create a K-mer database, Genomescope2 to estimate genome properties and Smudgeplot to estimate ploidy. The main results are K-mer ddatabase and genome profiling plots, tables, and values useful for downstream analysis. Default K-mer length and ploidy for Genomescope are 21 and 2, respectively.
Created: 8th Jan 2024 at 15:55, Last updated: 8th Jan 2024 at 15:57