3 items tagged with 'DataQC'.
Stable
The workflow takes a HiFi reads collection, runs FastQC and SeqKit, filters with Cutadapt, and creates a MultiQC report. The main outputs are a collection of filtred reads, a report with raw and filtered reads stats, and a table with raw reads stats.
Created: 6th Oct 2023 at 14:17, Last updated: 18th Sep 2024 at 14:15
Stable
The workflow takes a paired-reads collection (like illumina WGS or HiC), runs FastQC and SeqKit, trims with Fastp, and creates a MultiQC report. The main outputs are a paired collection of trimmed reads, a report with raw and trimmed reads stats, and a table with raw reads stats.
Created: 6th Oct 2023 at 14:03, Last updated: 18th Sep 2024 at 14:02
Stable
The workflow takes ONT reads collection, runs SeqKit and Nanoplot. The main outputs are a table and plots of raw reads stats.
Created: 8th Jan 2024 at 15:25, Last updated: 8th Jan 2024 at 15:57